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rpia-1 Probable-ribose 5-phosphate isomerase [ Caenorhabditis elegans ]

Gene ID: 175995, updated on 7-Sep-2023

Summary

Gene symbol
rpia-1
Gene description
Probable-ribose 5-phosphate isomerase
Primary source
WormBase:WBGene00015101
Locus tag
CELE_B0280.3
See related
AllianceGenome:WB:WBGene00015101
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ribose-5-phosphate isomerase activity. Predicted to be involved in D-ribose metabolic process and pentose-phosphate shunt, non-oxidative branch. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in head neurons; intestine; nerve ring; pharynx; and tail neurons. Orthologous to human RPIA (ribose 5-phosphate isomerase A). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See rpia-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (7123128..7124332)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Nuclear hormone receptor family member nhr-10 Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog Neighboring gene Uncharacterized protein Neighboring gene WH1 domain-containing protein Neighboring gene Protection of telomeres homolog 1

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 
enables ribose-5-phosphate isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ribose-5-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in D-ribose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 
involved_in pentose-phosphate shunt, non-oxidative branch IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Probable-ribose 5-phosphate isomerase
NP_498556.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7123128..7124332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066155.8NP_498556.1  Probable-ribose 5-phosphate isomerase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498556.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41994
    Conserved Domains (1) summary
    TIGR00021
    Location:18242
    rpiA; ribose 5-phosphate isomerase