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ida-1 Receptor-type tyrosine-protein phosphatase-like ida-1 [ Caenorhabditis elegans ]

Gene ID: 175807, updated on 5-Sep-2019

Summary

Gene symbol
ida-1
Gene description
Receptor-type tyrosine-protein phosphatase-like ida-1
Primary source
WormBase:WBGene00002048
Locus tag
CELE_B0244.2
Gene type
protein coding
RNA name
Receptor-type tyrosine-protein phosphatase-like ida-1
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See ida-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
12
Sequence:
Chromosome: III; NC_003281.10 (5755496..5765815)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein;Putative G-protein coupled receptor B0244.4 Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene tRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
transmembrane receptor protein tyrosine phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
exocytosis TAS
Traceable Author Statement
more info
PubMed 
peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of anterior/posterior axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of neurotransmitter secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
ventral cord development IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
axon IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
dendrite IEA
Inferred from Electronic Annotation
more info
 
dense core granule IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
perikaryon IEA
Inferred from Electronic Annotation
more info
 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
trans-Golgi network transport vesicle TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
Receptor-type tyrosine-protein phosphatase-like ida-1
NP_498245.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5755496..5765815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065844.6NP_498245.2  Receptor-type tyrosine-protein phosphatase-like ida-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498245.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EGJ5
    Conserved Domains (1) summary
    cd00047
    Location:529755
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
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