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wrm-1 Armadillo repeat-containing protein wrm-1 [ Caenorhabditis elegans ]

Gene ID: 175802, updated on 10-Aug-2021

Summary

Gene symbol
wrm-1
Gene description
Armadillo repeat-containing protein wrm-1
Primary source
WormBase:WBGene00006943
Locus tag
CELE_B0336.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See wrm-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
9
Sequence:
Chromosome: III; NC_003281.10 (5722850..5727115)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LDL receptor repeat-containing protein egg-1 Neighboring gene Uncharacterized protein Neighboring gene Putative G-protein coupled receptor B0244.7

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables alpha-catenin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
contributes_to protein kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein phosphatase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein serine/threonine kinase activator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in Wnt signaling pathway involved in dorsal/ventral axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in asymmetric protein localization involved in cell fate determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in canonical Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in embryonic body morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in endoderm development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in endodermal cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in endodermal digestive tract morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in endodermal digestive tract morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in establishment of mitotic spindle orientation IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in establishment of mitotic spindle orientation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in left/right axis specification IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in left/right axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of cell division IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in pharyngeal muscle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in polarity specification of proximal/distal axis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of asymmetric protein localization involved in cell fate determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of endodermal cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of protein localization to nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein phosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of protein-containing complex assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of endodermal cell differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in regulation of mesodermal cell fate specification IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in regulation of protein localization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell cortex IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of serine/threonine protein kinase complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Armadillo repeat-containing protein wrm-1
NP_001299856.1
  • Confirmed by transcript evidence
NP_498236.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5722850..5727115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065835.9NP_498236.1  Armadillo repeat-containing protein wrm-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498236.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q10953
    Conserved Domains (2) summary
    cd00020
    Location:418550
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:376408
    ARM; armadillo repeat [structural motif]
  2. NM_001312927.3NP_001299856.1  Armadillo repeat-containing protein wrm-1 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AUT2
    Conserved Domains (2) summary
    cd00020
    Location:364496
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:322354
    ARM; armadillo repeat [structural motif]
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