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rps-0 40S ribosomal protein SA [ Caenorhabditis elegans ]

Gene ID: 175628, updated on 8-Nov-2020

Summary

Gene symbol
rps-0
Gene description
40S ribosomal protein SA
Primary source
WormBase:WBGene00004469
Locus tag
CELE_B0393.1
Gene type
protein coding
RNA name
40S ribosomal protein SA
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See rps-0 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (4752011..4754051, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Col_cuticle_N domain-containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene Rab-GAP TBC domain-containing protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the rps-0 gene: The rps-0 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 
translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
40S ribosomal protein SA
NP_497978.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4752011..4754051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065577.8NP_497978.1  40S ribosomal protein SA [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497978.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P46769
    Conserved Domains (3) summary
    PTZ00254
    Location:1269
    PTZ00254; 40S ribosomal protein SA; Provisional
    pfam16122
    Location:207276
    40S_SA_C; 40S ribosomal protein SA C-terminus
    cl00315
    Location:11211
    RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
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