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pat-3 Integrin beta pat-3 [ Caenorhabditis elegans ]

Gene ID: 175504, updated on 5-Sep-2019

Summary

Gene symbol
pat-3
Gene description
Integrin beta pat-3
Primary source
WormBase:WBGene00003930
Locus tag
CELE_ZK1058.2
Gene type
protein coding
RNA name
Integrin beta pat-3
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See pat-3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
8
Sequence:
Chromosome: III; NC_003281.10 (3908924..3914149, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Sterile alpha and TIR motif-containing protein tir-1 Neighboring gene Probable methylmalonyl-CoA mutase, mitochondrial Neighboring gene CCDC (human Coiled Coil Domain Containing) homolog Neighboring gene Probable galactose-1-phosphate uridylyltransferase Neighboring gene Methyltransferase-like protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell adhesion mediated by integrin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-matrix adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integrin-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle cell cellular homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of epidermal growth factor receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of distal tip cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of locomotion IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of myosin II filament organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of ovulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of sarcomere organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of smooth muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of actin cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of distal tip cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of vulval development IGI
Inferred from Genetic Interaction
more info
PubMed 
striated muscle cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
vulval cell fate specification IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
M band IDA
Inferred from Direct Assay
more info
PubMed 
M band IEA
Inferred from Electronic Annotation
more info
 
Z disc IDA
Inferred from Direct Assay
more info
PubMed 
basal plasma membrane IEA
Inferred from Electronic Annotation
more info
 
basement membrane IDA
Inferred from Direct Assay
more info
PubMed 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell surface IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
focal adhesion IDA
Inferred from Direct Assay
more info
PubMed 
focal adhesion IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integrin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integrin complex IPI
Inferred from Physical Interaction
more info
PubMed 
lateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
lateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuron projection IDA
Inferred from Direct Assay
more info
PubMed 
neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
striated muscle dense body IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Integrin beta pat-3
NP_497787.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    3908924..3914149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065386.6NP_497787.1  Integrin beta pat-3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497787.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q27874
    Conserved Domains (3) summary
    smart00187
    Location:49474
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:654735
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:767804
    Integrin_b_cyt; Integrin beta cytoplasmic domain
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