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LMP2 EBNA3A nuclear protein [ Human gammaherpesvirus 4 (Epstein-Barr virus) ]

Gene ID: 17494212, discontinued on 1-Mar-2018
  • This record was discontinued.

Summary

Gene symbol
LMP2
Gene description
EBNA3A nuclear protein
Gene type
protein coding
RNA name
EBNA3A nuclear protein
RefSeq status
PROVISIONAL
Organism
Human gammaherpesvirus 4 (strain: B95-8)
Lineage
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Lymphocryptovirus

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Aryl Hydrocarbon Receptor, organism-specific biosystem (from WikiPathways)
    Aryl Hydrocarbon Receptor, organism-specific biosystemThe Aryl Hydrocarbon receptor (AhR) is ligand activated transcription factor that regulates wide spectrum of gene expression. The main mediator of AhR is 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) or...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

TATA_signal

  • Loc: 101588-101593
  • Loc: 106693-106698
  • Loc: 106810-106815
  • Loc: 11305-11308
  • Loc: 125569-125574
  • Loc: 130300-130305
  • Loc: 133013-133017
  • Loc: 135432-135436
  • Loc: 136331-136336
  • Loc: 14352
  • Loc: 164979-164984
  • Loc: 165008-165013
  • Loc: 166011-166016
  • Loc: 1691-1695
  • Loc: 17424
  • Loc: 20496
  • Loc: 23568
  • Loc: 26640
  • Loc: 29712
  • Loc: 32784
  • Loc: 41471-41476
  • Loc: 46544-46549
  • Loc: 49056-49061
  • Loc: 62729
  • Loc: 63881
  • Loc: 66516-66521
  • Loc: 67552-67557
  • Loc: 68491-68496
  • Loc: 68544-68549
  • Loc: 74594-74599
  • Loc: 76219-76224
  • Loc: 76575-76580
  • Loc: 92728-92733
  • Loc: 93955-93960
  • Loc: 9631-9636
  • Loc: 97617-97621

mat_peptide

  • Loc: 116900-118060
  • Loc: 86035-86481

Miscellaneous features

  • Loc: 100332 BAM: Bam H1 K/B
  • Loc: 110025 BAM: Bam H1 B/G
  • Loc: 116560 BAM: Bam H1 G/D
  • Loc: 124580 BAM: Bam H1 D/c
  • Loc: 125730 BAM: Bam H1 c/b
  • Loc: 127063 BAM: Bam H1 b/T
  • Loc: 130451 BAM: Bam H1 T/X
  • Loc: 13215 BAM: BamH1 C/W
  • Loc: 132573 BAM: Bam H1 X/V
  • Loc: 135718 BAM: Bam H1 V/d
  • Loc: 136826 BAM: Bam H1 d/I
  • Loc: 139723->151555 DEL: B95-8 deletion with respect to Raji
  • Loc: 139724-151554 5-11835 of Raji DNA restoring the B95-8 deletion sequence
  • Loc: 143272-144328 DR right, similar to 40366..41409, ori lyt
  • Loc: 153179 HPN: 22bp 2-fold symmetric
  • Loc: 154289 BAM: Bam H1 I/A
  • Loc: 16287 BAM: BamH1 W/W
  • Loc: 166156 BAM: Bam H1 A/Nhet
  • Loc: 19359 BAM: BamH1 W/W
  • Loc: 22431 BAM: BamH1 W/W
  • Loc: 25503 BAM: BamH1 W/W
  • Loc: 28575 BAM: BamH1 W/W
  • Loc: 31647 BAM: BamH1 W/W
  • Loc: 34719 BAM: BamH1 W/Y
  • Loc: 36560 BAM: BamH1 Y/H
  • Loc: 3955 BAM: Bam H1 Nhet/h
  • Loc: 3994 BAM: Bam H1 h/C
  • Loc: 40366-41409 DRleft, similar to 143272..144328
  • Loc: 42565 BAM: BamH1 H/F
  • Loc: 49961 BAM: BamH1 F/Q
  • Loc: 50142-50189 Site III for EBNA-1 binding
  • Loc: 53833 BAM: BamH1 Q/U
  • Loc: 57122 BAM: BamH1 U/P
  • Loc: 61180 BAM: BamH1 P/O
  • Loc: 65547-65552 BAM: Bam H1 O/a
  • Loc: 6629-6795 Pol III RNA EBER 1
  • Loc: 67249-67254 BAM: Bam H1 a/M
  • Loc: 6956-7128 Pol III RNA EBER 2
  • Loc: 71945 BAM: Bam H1 M/S
  • Loc: 75362 BAM: Bam H1 S/L
  • Loc: 80415 BAM: Bam H1 L/E
  • Loc: 88325 BAM: Bam H1 E/e1
  • Loc: 88631 BAM: Bam H1 e1/e2
  • Loc: 89138 BAM: Bam H1 e2/e3
  • Loc: 89659 BAM: Bam H1 e3/Z
  • Loc: 9021-9133 HPN: dyad symmetry, site II for EBNA-1 binding;~dyad symmetry part of oriP
  • Loc: 91453 BAM: Bam H1 Z/g
  • Loc: 91528 BAM: Bam H1 g/R
  • Loc: 95169 BAM: Bam H1 R/f
  • Loc: 95277 BAM: Bam H1 f/K

polyA_signal

  • Loc: 10257-10262
  • Loc: 104497-104502
  • Loc: 108070-108075
  • Loc: 115741-115746
  • Loc: 118059-118064
  • Loc: 128681-128686
  • Loc: 134881-134886
  • Loc: 137438-137443
  • Loc: 139478-139483
  • Loc: 152796-152801
  • Loc: 160508-160513
  • Loc: 165707-165712
  • Loc: 37715-37720
  • Loc: 43230-43235
  • Loc: 49781-49786
  • Loc: 5841-5846
  • Loc: 66595-66600
  • Loc: 69892-69897
  • Loc: 75311-75316
  • Loc: 77124-77129
  • Loc: 82933-82938
  • Loc: 89477-89482
  • Loc: 93822-93827
  • Loc: 95626-95631
  • Loc: 97649-97654
  • Loc: 99431-99436
  • Loc: 99499-99504

rep_origin

  • Loc: 143207-144444
  • Loc: 40301-40656
  • Loc: 40301-41293
  • Loc: 7315-9312

Repeated regions

  • Loc: 12001-15072
  • Loc: 138947-139329
  • Loc: 140765-143281 rpt_family = PstI repeats
  • Loc: 15073-18144
  • Loc: 18145-21216
  • Loc: 21217-24288
  • Loc: 24289-27360
  • Loc: 27361-30432
  • Loc: 30433-33504
  • Loc: 33505-35355
  • Loc: 36390-36512 rpt_unit_range = 36390..36398
  • Loc: 37237-37290 rpt_unit_range = 37237..37242
  • Loc: 38290-39827 rpt_unit_range = 38290..38414
  • Loc: 57396-57642 rpt_unit_range = 57396..57446
  • Loc: 58099-58233 rpt_unit_range = 58099..58113
  • Loc: 70031-70173 rpt_unit_range = 70031..70101
  • Loc: 71352-71441 rpt_unit_range = 71352..71360
  • Loc: 7421-8042 rpt_unit_range = 7421..7450
  • Loc: 77889-78351 rpt_unit_range = 77889..77919
  • Loc: 81920-81989 rpt_family = type A
  • Loc: 81993-82018 rpt_family = type B
  • Loc: 82019-82093 rpt_family = type C
  • Loc: 82098-82123 rpt_family = type B
  • Loc: 82124-82201 rpt_family = type C
  • Loc: 82202-82272 rpt_family = type A
  • Loc: 82283-82360 rpt_family = type C
  • Loc: 82361-82431 rpt_family = type A
  • Loc: 82608-82694 rpt_family = type D
  • Loc: 82695-82781 rpt_family = type D
  • Loc: 85234-85410 rpt_unit_range = 85234..85293
  • Loc: 87834-88016 rpt_unit_range = 87834..87848
  • Loc: 88377-88493 rpt_unit_range = 88377..88415
  • Loc: 90293-90364
  • Loc: 95929-96636 rpt_family = EBNA triplet repeat GGA,GCA,GGG

variation

  • Loc: 163519-166178 replace = gg
  • Loc: 33126-40537 replace = gt
  • Loc: 33355-40163 replace = gg
  • Loc: 86838-89830 replace = gc

General protein information

Names
EBNA3A nuclear protein
terminal protein LMP2A
terminal protein LMP2B
virion protein BBRF1
BGRF1-BDRF1 protein
putative DNA packaging protein
YP_401682.1
  • BBRF1
YP_401690.1
  • spliced BGRF1/BDRF1 reading frame

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007605.1 Reference assembly

    Range
    58..166458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_401669.1 EBNA3A nuclear protein [Human gammaherpesvirus 4]

    See identical proteins and their annotated locations for YP_401669.1

    Status: PROVISIONAL

  2. YP_401631.1 terminal protein LMP2A [Human gammaherpesvirus 4]

    See identical proteins and their annotated locations for YP_401631.1

    Status: PROVISIONAL

  3. YP_401632.1 terminal protein LMP2B [Human gammaherpesvirus 4]

    See identical proteins and their annotated locations for YP_401632.1

    Status: PROVISIONAL

  4. YP_401682.1 virion protein BBRF1 [Human gammaherpesvirus 4]

    See identical proteins and their annotated locations for YP_401682.1

    Status: PROVISIONAL

  5. YP_401690.1 BGRF1-BDRF1 protein [Human gammaherpesvirus 4]

    See identical proteins and their annotated locations for YP_401690.1

    Status: PROVISIONAL

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