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sop-2 Polycomb protein sop-2 [ Caenorhabditis elegans ]

Gene ID: 174874, updated on 5-Sep-2019

Summary

Gene symbol
sop-2
Gene description
Polycomb protein sop-2
Primary source
WormBase:WBGene00004945
Locus tag
CELE_C50E10.4
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sop-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (12339944..12344799)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class E (epsilon) Neighboring gene Serpentine Receptor, class E (epsilon) Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene tRNA Neighboring gene R-RAS related

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
enzyme binding IPI
Inferred from Physical Interaction
more info
PubMed 
identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
ubiquitin protein ligase binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
NOT Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development TAS
Traceable Author Statement
more info
PubMed 
negative regulation of cytoplasmic mRNA processing body assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription, DNA-templated IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
nematode larval development IGI
Inferred from Genetic Interaction
more info
PubMed 
neuron fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of development, heterochronic IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of gene expression, epigenetic IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
nuclear body IDA
Inferred from Direct Assay
more info
PubMed 
nuclear speck IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Polycomb protein sop-2
NP_001254340.1
  • Confirmed by transcript evidence
NP_001254341.1
  • Confirmed by transcript evidence
NP_001254342.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    12339944..12344799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267412.2NP_001254341.1  Polycomb protein sop-2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254341.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q965H3
    Conserved Domains (1) summary
    PRK11633
    Location:496615
    PRK11633; cell division protein DedD; Provisional
  2. NM_001267411.2NP_001254340.1  Polycomb protein sop-2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254340.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H8P172
    Conserved Domains (1) summary
    PHA03247
    Location:366621
    PHA03247; large tegument protein UL36; Provisional
  3. NM_001267413.2NP_001254342.1  Polycomb protein sop-2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254342.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H8P173
    Conserved Domains (1) summary
    pfam05843
    Location:272427
    Suf; Suppressor of forked protein (Suf)
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