Format

Send to:

Choose Destination

rrf-3 RNA-dependent RNA polymerase Family [ Caenorhabditis elegans ]

Gene ID: 174315, updated on 22-May-2018

Summary

Gene symbol
rrf-3
Gene description
RNA-dependent RNA polymerase Family
Primary source
WormBase:WBGene00004510
Locus tag
CELE_F10B5.7
Gene type
protein coding
RNA name
RNA-dependent RNA polymerase Family
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See rrf-3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
15
Sequence:
Chromosome: II; NC_003280.10 (8162558..8168512)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Putative pachytene checkpoint protein 2 Neighboring gene Cell division cycle protein 16 homolog Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Probable 2,4-dienoyl-CoA reductase 3

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • RNA interference and miRNA, organism-specific biosystem (from WikiPathways)
    RNA interference and miRNA, organism-specific biosystemRNA interference (RNAi) refers to the silencing of gene expression by the overexpression of sequence-specific RNA molecules. This process is associated with a cellular and nuclear defense mechanism u...

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
RNA-directed 5'-3' RNA polymerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
chromatin silencing by small RNA IMP
Inferred from Mutant Phenotype
more info
PubMed 
production of siRNA involved in RNA interference IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
production of siRNA involved in chromatin silencing by small RNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription, RNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nuclear RNA-directed RNA polymerase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RNA-dependent RNA polymerase Family
NP_495713.2
  • Product from WormBase gene class rrf;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8162558..8168512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063312.5NP_495713.2  RNA-dependent RNA polymerase Family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495713.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EE53
    Conserved Domains (1) summary
    pfam05183
    Location:6921221
    RdRP; RNA dependent RNA polymerase
Support Center