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rpy-1 43 kDa receptor-associated protein of the synapse homolog [ Caenorhabditis elegans ]

Gene ID: 174105, updated on 5-Sep-2019

Summary

Gene symbol
rpy-1
Gene description
43 kDa receptor-associated protein of the synapse homolog
Primary source
WormBase:WBGene00004507
Locus tag
CELE_C18H9.7
Gene type
protein coding
RNA name
43 kDa receptor-associated protein of the synapse homolog
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See rpy-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
13
Sequence:
Chromosome: II; NC_003280.10 (6702233..6705643, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cuticle collagen dpy-10 Neighboring gene hypothetical protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
acetylcholine receptor binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein membrane anchor IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
43 kDa receptor-associated protein of the synapse homolog
NP_495365.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6702233..6705643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062964.6NP_495365.2  43 kDa receptor-associated protein of the synapse homolog [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09485
    Conserved Domains (5) summary
    sd00006
    Location:102130
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:103170
    TPR_11; TPR repeat
    pfam13424
    Location:59130
    TPR_12; Tetratricopeptide repeat
    pfam13639
    Location:393437
    zf-RING_2; Ring finger domain
    cl24038
    Location:2097
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
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