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rig-6 Contactin rig-6 [ Caenorhabditis elegans ]

Gene ID: 173828, updated on 5-Sep-2019

Summary

Gene symbol
rig-6
Gene description
Contactin rig-6
Primary source
WormBase:WBGene00016354
Locus tag
CELE_C33F10.5
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See rig-6 in Genome Data Viewer
Location:
chromosome: II
Exon count:
14
Sequence:
Chromosome: II; NC_003280.10 (4798153..4812136, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Semialdhyde_dh domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
cell-cell adhesion mediator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
dendrite self-avoidance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
determination of left/right asymmetry in nervous system IMP
Inferred from Mutant Phenotype
more info
PubMed 
dorsal/ventral axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
epithelial tube morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
motor neuron axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
motor neuron axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of defecation rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of fertilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of locomotion involved in locomotory behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of axon extension involved in axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of axon extension involved in axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of distal tip cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of tube size IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
axon IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
axon IDA
Inferred from Direct Assay
more info
PubMed 
axon IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
perikaryon IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Contactin rig-6
NP_001022014.1
  • Confirmed by transcript evidence
NP_740979.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    4798153..4812136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026843.4NP_001022014.1  Contactin rig-6 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022014.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    H2KZ60
    Conserved Domains (6) summary
    smart00408
    Location:456524
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:363436
    IG_like; Immunoglobulin like
    cd00063
    Location:737839
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:441534
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:9701047
    fn3; Fibronectin type III domain
    cl11960
    Location:358427
    Ig; Immunoglobulin domain
  2. NM_170981.5NP_740979.1  Contactin rig-6 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_740979.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    H2KZ60
    Conserved Domains (5) summary
    smart00408
    Location:34102
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:315417
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:19112
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:548625
    fn3; Fibronectin type III domain
    cl11960
    Location:130205
    Ig; Immunoglobulin domain

RNA

  1. NR_151554.1 RNA Sequence

    Status: REVIEWED

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