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sea-2 Signal Element on Autosome [ Caenorhabditis elegans ]

Gene ID: 173738, updated on 6-Jun-2018

Summary

Gene symbol
sea-2
Gene description
Signal Element on Autosome
Primary source
WormBase:WBGene00004751
Locus tag
CELE_K10G6.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sea-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
14
Sequence:
Chromosome: II; NC_003280.10 (3950377..3971544)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
double-stranded RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
single-stranded RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
determination of adult lifespan IMP
Inferred from Mutant Phenotype
more info
PubMed 
dosage compensation IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of development, heterochronic IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of development, heterochronic IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to heat IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Signal Element on Autosome
NP_001293473.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001293474.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001293475.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001293476.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001293477.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300480.1
  • Product from WormBase gene class sea;
    Partially confirmed by transcript evidence
NP_001300481.1
  • Product from WormBase gene class sea;
    Partially confirmed by transcript evidence
NP_001300482.1
  • Product from WormBase gene class sea;
    Partially confirmed by transcript evidence
NP_001300483.1
  • Product from WormBase gene class sea;
    Partially confirmed by transcript evidence
NP_001300564.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300565.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300566.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300567.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300568.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300569.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300570.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300571.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300572.1
  • Product from WormBase gene class sea;
    Confirmed by transcript evidence
NP_001300573.1
  • Product from WormBase gene class sea;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3950377..3971544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001313552.1NP_001300481.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AUE4
    Conserved Domains (1) summary
    PRK12323
    Location:13061510
    PRK12323; DNA polymerase III subunits gamma and tau; Provisional
  2. NM_001313554.1NP_001300483.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3ARE6
    Conserved Domains (1) summary
    smart00225
    Location:17251811
    BTB; Broad-Complex, Tramtrack and Bric a brac
  3. NM_001313551.1NP_001300480.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AQV3
    Conserved Domains (1) summary
    pfam13894
    Location:12741297
    zf-C2H2_4; C2H2-type zinc finger
  4. NM_001313553.1NP_001300482.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AWR2
    Conserved Domains (1) summary
    pfam13894
    Location:11291152
    zf-C2H2_4; C2H2-type zinc finger
  5. NM_001306544.1NP_001293473.1  Signal Element on Autosome [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293473.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6EZL2
    Conserved Domains (1) summary
    smart00225
    Location:17741860
    BTB; Broad-Complex, Tramtrack and Bric a brac
  6. NM_001306545.1NP_001293474.1  Signal Element on Autosome [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293474.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6FMY4
    Conserved Domains (1) summary
    smart00225
    Location:16231709
    BTB; Broad-Complex, Tramtrack and Bric a brac
  7. NM_001306546.1NP_001293475.1  Signal Element on Autosome [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293475.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6FWN6
    Conserved Domains (1) summary
    pfam13894
    Location:11781201
    zf-C2H2_4; C2H2-type zinc finger
  8. NM_001313635.1NP_001300564.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AU01
    Conserved Domains (1) summary
    pfam13894
    Location:10331056
    zf-C2H2_4; C2H2-type zinc finger
  9. NM_001313639.1NP_001300568.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3ARN1
    Conserved Domains (2) summary
    smart00225
    Location:16941780
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam13894
    Location:10981121
    zf-C2H2_4; C2H2-type zinc finger
  10. NM_001313640.1NP_001300569.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AU05
    Conserved Domains (1) summary
    smart00225
    Location:15491635
    BTB; Broad-Complex, Tramtrack and Bric a brac
  11. NM_001313636.1NP_001300565.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AR28
    Conserved Domains (1) summary
    pfam13894
    Location:10981121
    zf-C2H2_4; C2H2-type zinc finger
  12. NM_001313637.1NP_001300566.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AUM9
    Conserved Domains (1) summary
    pfam13894
    Location:953976
    zf-C2H2_4; C2H2-type zinc finger
  13. NM_001313643.1NP_001300572.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AX01
    Conserved Domains (1) summary
    smart00225
    Location:15321618
    BTB; Broad-Complex, Tramtrack and Bric a brac
  14. NM_001313642.1NP_001300571.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AUN5
    Conserved Domains (1) summary
    smart00225
    Location:13871473
    BTB; Broad-Complex, Tramtrack and Bric a brac
  15. NM_001306547.1NP_001293476.1  Signal Element on Autosome [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293476.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6F519
    Conserved Domains (1) summary
    pfam13894
    Location:936959
    zf-C2H2_4; C2H2-type zinc finger
  16. NM_001313638.1NP_001300567.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AWZ4
    Conserved Domains (1) summary
    pfam13894
    Location:791814
    zf-C2H2_4; C2H2-type zinc finger
  17. NM_001313644.1NP_001300573.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3ARN6
    Conserved Domains (2) summary
    smart00225
    Location:10031089
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam13894
    Location:407430
    zf-C2H2_4; C2H2-type zinc finger
  18. NM_001306548.1NP_001293477.1  Signal Element on Autosome [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6FCX8
    Conserved Domains (1) summary
    pfam13894
    Location:407430
    zf-C2H2_4; C2H2-type zinc finger
  19. NM_001313641.1NP_001300570.1  Signal Element on Autosome [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AR30
    Conserved Domains (1) summary
    smart00225
    Location:18104
    BTB; Broad-Complex, Tramtrack and Bric a brac
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