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col-71 Col_cuticle_N domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173695, updated on 5-Sep-2019

Summary

Gene symbol
col-71
Gene description
Col_cuticle_N domain-containing protein
Primary source
WormBase:WBGene00000647
Locus tag
CELE_Y49F6B.10
Gene type
protein coding
RNA name
Col_cuticle_N domain-containing protein
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See col-71 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (3500077..3502570, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene F-box B protein Neighboring gene RBR-type E3 ubiquitin transferase Neighboring gene ncRNA Neighboring gene Fcf2 domain-containing protein Neighboring gene CYclin H Neighboring gene ncRNA

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
extracellular matrix structural constituent IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Col_cuticle_N domain-containing protein
NP_494562.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3500077..3502570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062161.5NP_494562.1  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494562.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4U2
    Conserved Domains (2) summary
    pfam01391
    Location:225282
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:3688
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
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