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Mfge8 milk fat globule EGF and factor V/VIII domain containing [ Mus musculus (house mouse) ]

Gene ID: 17304, updated on 5-Mar-2024

Summary

Official Symbol
Mfge8provided by MGI
Official Full Name
milk fat globule EGF and factor V/VIII domain containingprovided by MGI
Primary source
MGI:MGI:102768
See related
Ensembl:ENSMUSG00000030605 AllianceGenome:MGI:102768
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
P47; MP47; Mfgm; SED1; MFG-E8; lactadherin
Summary
Enables integrin binding activity; phosphatidylethanolamine binding activity; and phosphatidylserine binding activity. Involved in apoptotic cell clearance. Acts upstream of or within phagocytosis, engulfment; phagocytosis, recognition; and positive regulation of phagocytosis. Located in external side of plasma membrane and extracellular space. Is extrinsic component of plasma membrane. Is expressed in several structures, including alimentary system; cap mesenchyme; central nervous system; reproductive system; and sensory organ. Human ortholog(s) of this gene implicated in temporal arteritis. Orthologous to human MFGE8 (milk fat globule EGF and factor V/VIII domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in genital fat pad adult (RPKM 1673.1), spleen adult (RPKM 373.7) and 7 other tissues See more
Orthologs
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Genomic context

See Mfge8 in Genome Data Viewer
Location:
7 D2; 7 44.9 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (78783516..78798808, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79133768..79149060, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26633 Neighboring gene aggrecan Neighboring gene STARR-seq mESC enhancer starr_19258 Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene STARR-seq mESC enhancer starr_19263 Neighboring gene STARR-seq mESC enhancer starr_19264 Neighboring gene predicted gene, 39040 Neighboring gene STARR-seq mESC enhancer starr_19267 Neighboring gene STARR-positive B cell enhancer ABC_E47 Neighboring gene predicted gene, 31510

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables extracellular matrix structural constituent RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
enables integrin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables phosphatidylserine binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within angiogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in apoptotic cell clearance IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within single fertilization IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lactadherin
Names
EGF/factor VIII
milk fat globule glycoprotein
milk fat globule-EGF factor 8 protein
sperm surface protein SP47

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045489.1NP_001038954.1  lactadherin isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
    Source sequence(s)
    AC110520, AK087555, AK148371, CD776821
    Consensus CDS
    CCDS39989.1
    UniProtKB/TrEMBL
    Q3TDU5
    Related
    ENSMUSP00000103032.4, ENSMUST00000107409.5
    Conserved Domains (2) summary
    cd00057
    Location:273425
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00008
    Location:68106
    EGF; EGF-like domain
  2. NM_008594.2NP_032620.2  lactadherin isoform 1 precursor

    See identical proteins and their annotated locations for NP_032620.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AC110520, AK152088, CD776821
    Consensus CDS
    CCDS21379.1
    UniProtKB/Swiss-Prot
    P21956, P97800, Q3TBN5, Q3U8S9, Q9R1X9, Q9WTS3
    UniProtKB/TrEMBL
    Q3TDU5
    Related
    ENSMUSP00000032825.9, ENSMUST00000032825.14
    Conserved Domains (3) summary
    smart00231
    Location:307463
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
    cd00057
    Location:310462
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam00008
    Location:68106
    EGF; EGF-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    78783516..78798808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)