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lin-11 Protein lin-11 [ Caenorhabditis elegans ]

Gene ID: 172893, updated on 10-Aug-2021

Summary

Gene symbol
lin-11
Gene description
Protein lin-11
Primary source
WormBase:WBGene00003000
Locus tag
CELE_ZC247.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See lin-11 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_003279.8 (10248288..10255327)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in axonal fasciculation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in oviposition IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of vulval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Protein lin-11
NP_492696.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10248288..10255327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060295.6NP_492696.1  Protein lin-11 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492696.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P20154
    Conserved Domains (3) summary
    cd09375
    Location:127182
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    pfam00046
    Location:244297
    Homeobox; Homeobox domain
    pfam00412
    Location:68123
    LIM; LIM domain
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