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sup-46 SUPpressor [ Caenorhabditis elegans ]

Gene ID: 172881, updated on 6-Jul-2021

Summary

Gene symbol
sup-46
Gene description
SUPpressor
Primary source
WormBase:WBGene00045383
Locus tag
CELE_C25A1.4
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See sup-46 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (10169639..10172603, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene FAM192A_Fyv6_N domain-containing protein Neighboring gene Fork-head domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Fatty acid 2-hydroxylase

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA stability involved in response to oxidative stress IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of post-mRNA release spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
SUPpressor
NP_492677.1
  • Product from WormBase gene class sup;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10169639..10172603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060276.6NP_492677.1  SUPpressor [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVS2
    Conserved Domains (4) summary
    COG0724
    Location:47123
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd00590
    Location:387452
    RRM_SF; RNA recognition motif (RRM) superfamily
    cd12386
    Location:190263
    RRM2_hnRNPM_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein M (hnRNP M) and similar proteins
    cl17169
    Location:47120
    RRM_SF; RNA recognition motif (RRM) superfamily
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