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fog-3 Feminization Of Germline [ Caenorhabditis elegans ]

Gene ID: 172863, updated on 12-Aug-2018

Summary

Gene symbol
fog-3
Gene description
Feminization Of Germline
Primary source
WormBase:WBGene00001483
Locus tag
CELE_C03C11.2
Gene type
protein coding
RNA name
Feminization Of Germline
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See fog-3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (10016778..10017928)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene Tyrosine-protein phosphatase Neighboring gene hypothetical protein

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
masculinization of hermaphroditic germ-line IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of nucleic acid-templated transcription IEA
Inferred from Electronic Annotation
more info
 
positive regulation of oocyte development IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spermatogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nuclear periphery IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Feminization Of Germline
NP_492646.1
  • Product from WormBase gene class fog;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10016778..10017928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060245.4NP_492646.1  Feminization Of Germline [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492646.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDX7
    Conserved Domains (1) summary
    pfam07742
    Location:1110
    BTG; BTG family
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