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nhr-23 Nuclear hormone receptor family member nhr-23 [ Caenorhabditis elegans ]

Gene ID: 172460, updated on 3-Nov-2019

Summary

Gene symbol
nhr-23
Gene description
Nuclear hormone receptor family member nhr-23
Primary source
WormBase:WBGene00003622
Locus tag
CELE_C01H6.5
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See nhr-23 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_003279.8 (7214745..7221827)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene Flavin-containing monooxygenase Neighboring gene Metal transporter cnnm-4 Neighboring gene Bromo domain-containing protein

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
molting cycle, collagen and cuticulin-based cuticle IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
steroid hormone mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nuclear hormone receptor family member nhr-23
NP_001020975.1
  • Confirmed by transcript evidence
NP_001020976.1
  • Confirmed by transcript evidence
NP_001020977.1
  • Confirmed by transcript evidence
NP_001032969.1
  • Confirmed by transcript evidence
NP_001032971.1
  • Confirmed by transcript evidence
NP_001359698.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7214745..7221827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001025806.4NP_001020977.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001020977.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41828
    Conserved Domains (2) summary
    cd06968
    Location:599
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:233429
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
  2. NM_001037880.3NP_001032969.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001032969.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41828
    Conserved Domains (2) summary
    cd06968
    Location:599
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:235431
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
  3. NM_001025804.4NP_001020975.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001020975.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41828
    Conserved Domains (2) summary
    cd06968
    Location:156250
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:384580
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
  4. NM_001037882.4NP_001032971.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001032971.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41828
    Conserved Domains (2) summary
    cd06968
    Location:121215
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:351547
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
  5. NM_001025805.4NP_001020976.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001020976.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P41828
    Conserved Domains (2) summary
    cd06968
    Location:121215
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:349545
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
  6. NM_001373025.1NP_001359698.1  Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]

    Status: REVIEWED

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