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nars-1 Asparagine--tRNA ligase, cytoplasmic [ Caenorhabditis elegans ]

Gene ID: 172442, updated on 28-May-2020

Summary

Gene symbol
nars-1
Gene description
Asparagine--tRNA ligase, cytoplasmic
Primary source
WormBase:WBGene00003815
Locus tag
CELE_F22D6.3
Gene type
protein coding
RNA name
Asparagine--tRNA ligase, cytoplasmic
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See nars-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (7088025..7090418, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Tyrosine-protein kinase Neighboring gene hypothetical protein Neighboring gene Neighboring gene Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Neighboring gene Neighboring gene Protein kinase domain-containing protein Neighboring gene hypothetical protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the nars-1 gene: The nars-1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
aminoacyl-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 
asparagine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 
ligase activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
asparaginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Asparagine--tRNA ligase, cytoplasmic
NP_001021405.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7088025..7090418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026234.7NP_001021405.1  Asparagine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021405.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q19722
    Conserved Domains (3) summary
    COG0017
    Location:108545
    AsnS; Aspartyl/asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
    cd00776
    Location:220541
    AsxRS_core; Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as ...
    cd04323
    Location:123206
    AsnRS_cyto_like_N; AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a ...

RNA

  1. NR_002344.1 RNA Sequence

    Status: REVIEWED

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