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abtm-1 ABC Transporter, Mitochondrial [ Caenorhabditis elegans ]

Gene ID: 171807, updated on 3-Jan-2019

Summary

Gene symbol
abtm-1
Gene description
ABC Transporter, Mitochondrial
Primary source
WormBase:WBGene00022281
Locus tag
CELE_Y74C10AR.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See abtm-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (2472418..2485382, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Innexin-19 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Eukaryotic translation initiation factor 3 subunit I Neighboring gene RNA helicase

Pathways from BioSystems

General gene information

Markers

Homology

  • Homologs of the abtm-1 gene: The abtm-1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
ATPase activity, coupled to transmembrane movement of substances IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATPase activity, coupled to transmembrane movement of substances IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cellular iron ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular iron ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ABC Transporter, Mitochondrial
NP_001021830.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class abtm
NP_001293285.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class abtm
NP_001293306.1
  • Product from WormBase gene class abtm;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2472418..2485382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026659.1NP_001021830.1  ABC Transporter, Mitochondrial [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021830.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G4SRS5
    Conserved Domains (3) summary
    COG5265
    Location:172667
    ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
    cl00549
    Location:104387
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:437670
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  2. NM_001306377.1NP_001293306.1  ABC Transporter, Mitochondrial [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293306.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AJH7
    Conserved Domains (1) summary
    cl21455
    Location:160
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  3. NM_001306356.1NP_001293285.1  ABC Transporter, Mitochondrial [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293285.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061ACG9
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