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icd-2 Nascent polypeptide-associated complex subunit alpha [ Caenorhabditis elegans ]

Gene ID: 171646, updated on 19-Aug-2018

Summary

Gene symbol
icd-2
Gene description
Nascent polypeptide-associated complex subunit alpha
Primary source
WormBase:WBGene00022042
Locus tag
CELE_Y65B4BR.5
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See icd-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (535808..536493)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene PSF (yeast Partner of Sld Five) conserved replication factor, GINS complex Neighboring gene ncRNA Neighboring gene E3 ubiquitin-protein ligase Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nascent polypeptide-associated complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nascent polypeptide-associated complex subunit alpha
NP_001293273.1
  • Confirmed by transcript evidence
NP_001293274.1
  • Confirmed by transcript evidence
NP_490749.1
  • Confirmed by transcript evidence
NP_871846.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    535808..536493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_182046.6NP_871846.1  Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_871846.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q86S66
    Conserved Domains (3) summary
    COG1308
    Location:60197
    EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
    cd14358
    Location:160196
    UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
    pfam01849
    Location:61114
    NAC; NAC domain
  2. NM_058348.5NP_490749.1  Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490749.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q86S66
    Conserved Domains (3) summary
    COG1308
    Location:60195
    EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
    cd14358
    Location:158194
    UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
    pfam01849
    Location:61114
    NAC; NAC domain
  3. NM_001306344.1NP_001293273.1  Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293273.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CKR1
    Conserved Domains (3) summary
    COG1308
    Location:45180
    EGD2; Transcription factor homologous to NACalpha-BTF3 [Transcription]
    cd14358
    Location:143179
    UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
    pfam01849
    Location:4699
    NAC; NAC domain
  4. NM_001306345.1NP_001293274.1  Nascent polypeptide-associated complex subunit alpha [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293274.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CM32
    Conserved Domains (1) summary
    cl21463
    Location:2346
    UBA_like_SF; UBA domain-like superfamily
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