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Il17rd interleukin 17 receptor D [ Mus musculus (house mouse) ]

Gene ID: 171463, updated on 12-May-2024

Summary

Official Symbol
Il17rdprovided by MGI
Official Full Name
interleukin 17 receptor Dprovided by MGI
Primary source
MGI:MGI:2159727
See related
Ensembl:ENSMUSG00000040717 AllianceGenome:MGI:2159727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sef; mSef; Sef-S; IL-17RD; 2810004A10Rik
Summary
Predicted to enable interleukin-17 receptor activity. Involved in negative regulation of epithelial to mesenchymal transition and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in Golgi apparatus and nucleoplasm. Is expressed in several structures, including alimentary system; brain; branchial arch; extraembryonic component; and sensory organ. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 18 with or without anosmia. Orthologous to human IL17RD (interleukin 17 receptor D). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 5.6), lung adult (RPKM 4.4) and 23 other tissues See more
Orthologs
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Genomic context

See Il17rd in Genome Data Viewer
Location:
14 A3; 14 16.09 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (26760990..26829243)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (27038964..27107286)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 Neighboring gene STARR-seq mESC enhancer starr_36250 Neighboring gene STARR-seq mESC enhancer starr_36251 Neighboring gene predicted gene, 41114 Neighboring gene STARR-positive B cell enhancer mm9_chr14:27843023-27843323 Neighboring gene STARR-seq mESC enhancer starr_36253 Neighboring gene homeobox gene expressed in ES cells Neighboring gene STARR-seq mESC enhancer starr_36262 Neighboring gene STARR-seq mESC enhancer starr_36263 Neighboring gene Rho guanine nucleotide exchange factor 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:28044030-28044193 Neighboring gene predicted gene 7591 Neighboring gene predicted gene, 34848

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC118454

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables interleukin-17 receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
interleukin-17 receptor D
Names
IL-17 receptor D
interleukin-17 receptor-like protein
sef homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001411765.1NP_001398694.1  interleukin-17 receptor D isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC124603, AC125152
  2. NM_134437.4NP_602319.1  interleukin-17 receptor D isoform 1 precursor

    See identical proteins and their annotated locations for NP_602319.1

    Status: VALIDATED

    Source sequence(s)
    AC124603, AC125152
    Consensus CDS
    CCDS26885.1
    UniProtKB/Swiss-Prot
    B2RRY7, Q8JZL1, Q8K447, Q8R5J8
    Related
    ENSMUSP00000036076.4, ENSMUST00000035336.5
    Conserved Domains (2) summary
    pfam08357
    Location:356511
    SEFIR; SEFIR domain
    pfam16742
    Location:48169
    IL17R_D_N; N-terminus of interleukin 17 receptor D

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    26760990..26829243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518668.2XP_006518731.1  interleukin-17 receptor D isoform X2

    UniProtKB/TrEMBL
    Q3V0D5
    Related
    ENSMUSP00000153543.2, ENSMUST00000225146.2
    Conserved Domains (2) summary
    pfam08357
    Location:212367
    SEFIR; SEFIR domain
    pfam16742
    Location:125
    IL17R_D_N; N-terminus of interleukin 17 receptor D

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_027265.1: Suppressed sequence

    Description
    NM_027265.1: This RefSeq was permanently suppressed because it is primarily UTR sequence.