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Clstn2 calsyntenin 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 171394, updated on 6-May-2021

Summary

Symbol
Clstn2provided by RGD
Full Name
calsyntenin 2provided by RGD
Primary source
RGD:621151
See related
Ensembl:ENSRNOG00000043085
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cs2; Cstn2
Summary
postsynaptic membrane protein involved in excitatory synaptic transmission [RGD, Feb 2006]
Expression
Biased expression in Brain (RPKM 133.4), Heart (RPKM 72.6) and 3 other tissues See more
Orthologs
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Genomic context

See Clstn2 in Genome Data Viewer
Location:
8q31
Exon count:
17
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (98020406..98637232, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (105322577..106036821, complement)

Chromosome 8 - NC_051343.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 42 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene U6 spliceosomal RNA Neighboring gene nicotinamide nucleotide adenylyltransferase 3 Neighboring gene retinol binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
located_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of postsynaptic density membrane ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in postsynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in postsynaptic membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
calsyntenin-2
Names
alc-gamma
alcadein-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134377.1NP_599204.1  calsyntenin-2 precursor

    See identical proteins and their annotated locations for NP_599204.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ427342
    UniProtKB/Swiss-Prot
    Q8VDA1
    Related
    ENSRNOP00000070212.1, ENSRNOT00000078760.1
    Conserved Domains (1) summary
    cd11304
    Location:167258
    Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051343.1 Reference mRatBN7.2 Primary Assembly

    Range
    98020406..98637232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017595430.2XP_017450919.1  calsyntenin-2 isoform X1

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