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GATD1-DT GATD1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 171391, updated on 18-Dec-2021

Summary

Official Symbol
GATD1-DTprovided by HGNC
Official Full Name
GATD1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:29907
See related
Ensembl:ENSG00000255284
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NS3BP
Expression
Ubiquitous expression in fat (RPKM 4.1), skin (RPKM 2.6) and 24 other tissues See more
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Genomic context

See GATD1-DT in Genome Data Viewer
Location:
11p15.5
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (777578..784297)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (777578..784297)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene transaldolase 1 Neighboring gene glutamine amidotransferase class 1 domain containing 1 Neighboring gene cell cycle exit and neuronal differentiation 1 Neighboring gene solute carrier family 25 member 22 Neighboring gene proapoptotic nucleolar protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126342.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' region and lacks an alternate segment in the 3' region, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AP006621, BU156985, DB473307
    Related
    ENST00000525941.1
  2. NR_126343.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BF529437, BU156985, DB473307
    Related
    ENST00000530083.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    777578..784297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_138291.1: Suppressed sequence

    Description
    NM_138291.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  2. NR_046316.1: Suppressed sequence

    Description
    NR_046316.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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