U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vmn1r38 vomeronasal 1 receptor 38 [ Mus musculus (house mouse) ]

Gene ID: 171186, updated on 8-Feb-2024

Summary

Official Symbol
Vmn1r38provided by MGI
Official Full Name
vomeronasal 1 receptor 38provided by MGI
Primary source
MGI:MGI:2159445
See related
Ensembl:ENSMUSG00000115170 AllianceGenome:MGI:2159445
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rc13
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
6 C1; 6 30.64 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (66753206..66754114, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (66776222..66777130, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene Neighboring gene vomeronasal 1 receptor, pseudogene 24 Neighboring gene STARR-seq mESC enhancer starr_16158 Neighboring gene vomeronasal 1 receptor 39 Neighboring gene predicted gene, 36610

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
vomeronasal 1 receptor 38
Names
vomernasal 1 receptor Vmn1r38
vomeronasal 1 receptor, C13

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134168.1NP_598929.1  vomeronasal 1 receptor 38

    See identical proteins and their annotated locations for NP_598929.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065469
    Consensus CDS
    CCDS20216.1
    UniProtKB/TrEMBL
    Q8R2E1
    Related
    ENSMUSP00000154495.2, ENSMUST00000227694.2
    Conserved Domains (1) summary
    pfam03402
    Location:33293
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    66753206..66754114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)