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Ap3m1 adaptor related protein complex 3 subunit mu 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 171126, updated on 10-Oct-2019

Summary

Official Symbol
Ap3m1provided by RGD
Official Full Name
adaptor related protein complex 3 subunit mu 1provided by RGD
Primary source
RGD:620417
See related
Ensembl:ENSRNOG00000011461
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
P47a
Summary
may act as an adaptor complex subunit; may play a role in intracellular transport [RGD, Feb 2006]
Expression
Biased expression in Adrenal (RPKM 158.5), Lung (RPKM 156.6) and 9 other tissues See more
Orthologs

Genomic context

See Ap3m1 in Genome Data Viewer
Location:
15p16
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (3435998..3454281)
106 current Rn_Celera (GCF_000002265.2) 15 AC_000083.1 (1326338..1344266, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (3414320..3432591)

Chromosome 15 - NC_005114.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553460 Neighboring gene adenosine kinase Neighboring gene vinculin Neighboring gene plasminogen activator, urokinase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
Rab GTPase binding IEA
Inferred from Electronic Annotation
more info
 
Rab GTPase binding ISO
Inferred from Sequence Orthology
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
anterograde axonal transport ISO
Inferred from Sequence Orthology
more info
PubMed 
anterograde axonal transport ISS
Inferred from Sequence or Structural Similarity
more info
 
anterograde synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 
anterograde synaptic vesicle transport ISO
Inferred from Sequence Orthology
more info
PubMed 
anterograde synaptic vesicle transport ISS
Inferred from Sequence or Structural Similarity
more info
 
intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
axon ISO
Inferred from Sequence Orthology
more info
PubMed 
axon cytoplasm IEA
Inferred from Electronic Annotation
more info
 
axon cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
cell ISO
Inferred from Sequence Orthology
more info
PubMed 
clathrin adaptor complex IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
AP-3 complex subunit mu-1
Names
AP-3 adapter complex mu3A subunit
AP-3 adaptor complex mu3A subunit
HA1 47 kDa subunit homolog 1
Mu-adaptin 3A
adapter-related protein complex 3 mu-1 subunit
adapter-related protein complex 3 subunit mu-1
adaptor-related protein complex 3, mu 1 subunit
adaptor-related protein complex AP-3, mu 1 subunit
clathrin assembly protein assembly protein complex 1 medium chain homolog 1
clathrin assembly protein assembly protein complex 3 mu-1 medium chain
clathrin coat assembly protein AP47 homolog 1
clathrin coat-associated protein AP47 homolog 1
clathrin-associated adaptor protein homolog (p47A)
golgi adaptor AP-1 47 kDa protein homolog 1
mu3A-adaptin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133593.2NP_598277.2  AP-3 complex subunit mu-1

    See identical proteins and their annotated locations for NP_598277.2

    Status: PROVISIONAL

    Source sequence(s)
    BC070925
    UniProtKB/TrEMBL
    Q6IRG9
    Related
    ENSRNOP00000016387.3, ENSRNOT00000016387.4
    Conserved Domains (2) summary
    cd09260
    Location:165418
    AP-3_Mu3A_Cterm; C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3
    cl02092
    Location:1144
    Clat_adaptor_s; Clathrin adaptor complex small chain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005114.4 Reference Rnor_6.0 Primary Assembly

    Range
    3435998..3454281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006251630.3XP_006251692.1  AP-3 complex subunit mu-1 isoform X1

    See identical proteins and their annotated locations for XP_006251692.1

    UniProtKB/TrEMBL
    Q6IRG9
    Conserved Domains (2) summary
    cd09260
    Location:165418
    AP-3_Mu3A_Cterm; C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3
    cl02092
    Location:1144
    Clat_adaptor_s; Clathrin adaptor complex small chain
  2. XM_006251629.2XP_006251691.1  AP-3 complex subunit mu-1 isoform X1

    See identical proteins and their annotated locations for XP_006251691.1

    UniProtKB/TrEMBL
    Q6IRG9
    Conserved Domains (2) summary
    cd09260
    Location:165418
    AP-3_Mu3A_Cterm; C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3
    cl02092
    Location:1144
    Clat_adaptor_s; Clathrin adaptor complex small chain

Alternate Rn_Celera

Genomic

  1. AC_000083.1 Alternate Rn_Celera

    Range
    1326338..1344266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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