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DEFT1P defensin theta 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 170949, updated on 13-May-2022

Summary

Official Symbol
DEFT1Pprovided by HGNC
Official Full Name
defensin theta 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:18339
See related
Ensembl:ENSG00000215378 AllianceGenome:HGNC:18339
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DEFQ1; DEFT1
Expression
Restricted expression toward bone marrow (RPKM 1.1) See more
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Genomic context

See DEFT1P in Genome Data Viewer
Location:
8p23.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (6987178..6989721, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (6741845..6744387, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (6844700..6847243, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene defensin alpha 10, pseudogene Neighboring gene uncharacterized LOC124901873 Neighboring gene defensin alpha 1 Neighboring gene uncharacterized LOC124901874 Neighboring gene defensin alpha 1B Neighboring gene defensin theta 1, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • circular minidefensin
  • defensin-related pseudogene
  • demidefensin
  • pro-retrocyclin
  • retrocyclin pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036686.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF233439, AF355799
    Related
    ENST00000453425.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    6987178..6989721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    382297..384838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    6741845..6744387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005042.2: Suppressed sequence

    Description
    NG_005042.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
  2. NM_139127.2: Suppressed sequence

    Description
    NM_139127.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.