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Ncr1 natural cytotoxicity triggering receptor 1 [ Mus musculus (house mouse) ]

Gene ID: 17086, updated on 21-Sep-2021

Summary

Official Symbol
Ncr1provided by MGI
Official Full Name
natural cytotoxicity triggering receptor 1provided by MGI
Primary source
MGI:MGI:1336212
See related
Ensembl:ENSMUSG00000062524
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly9; NKp; Ly94; NKp46
Expression
Biased expression in spleen adult (RPKM 2.2), lung adult (RPKM 0.8) and 7 other tissues See more
Orthologs
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Genomic context

See Ncr1 in Genome Data Viewer
Location:
7; 7 A1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (4340714..4348183)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (4337715..4345184)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (4289326..4296766)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 Neighboring gene predicted gene 15931 Neighboring gene glycoprotein 6 (platelet) Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to virus IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within detection of virus IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
natural cytotoxicity triggering receptor 1
Names
MAR1 (mouse activating receptor 1)
NK-p46
activating receptor 1
lymphocyte antigen 94
mAR-1
mNKp46
natural killer cell p46-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368364.1NP_001355293.1  natural cytotoxicity triggering receptor 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC137969
    Related
    ENSMUSP00000145847.2, ENSMUST00000126417.3
  2. NM_010746.3NP_034876.2  natural cytotoxicity triggering receptor 1 isoform 1 precursor

    See identical proteins and their annotated locations for NP_034876.2

    Status: VALIDATED

    Source sequence(s)
    AK079401
    Consensus CDS
    CCDS20734.1
    UniProtKB/Swiss-Prot
    Q8C567
    UniProtKB/TrEMBL
    A0A0R4IZY7
    Related
    ENSMUSP00000006792.5, ENSMUST00000006792.6
    Conserved Domains (1) summary
    cl11960
    Location:123210
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    4340714..4348183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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