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Atxn10 ataxin 10 [ Rattus norvegicus (Norway rat) ]

Gene ID: 170821, updated on 18-Apr-2019

Summary

Official Symbol
Atxn10provided by RGD
Official Full Name
ataxin 10provided by RGD
Primary source
RGD:621813
See related
Ensembl:ENSRNOG00000014637
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Sca10
Summary
human homolog is a region of a chromosome highly linked to autosomal dominant cerebellar ataxias [RGD, Feb 2006]
Expression
Biased expression in Brain (RPKM 430.1), Heart (RPKM 338.1) and 9 other tissues See more
Orthologs

Genomic context

See Atxn10 in Genome Data Viewer
Location:
7q34
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (126228416..126351728)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (125942296..126065030)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692953 Neighboring gene fibulin 1 Neighboring gene Wnt family member 7B Neighboring gene uncharacterized LOC102554082

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enzyme binding IPI
Inferred from Physical Interaction
more info
PubMed 
identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cilium assembly IEA
Inferred from Electronic Annotation
more info
 
cilium assembly ISO
Inferred from Sequence Orthology
more info
PubMed 
nervous system development ISO
Inferred from Sequence Orthology
more info
PubMed 
neuron projection development ISO
Inferred from Sequence Orthology
more info
PubMed 
neuron projection development ISS
Inferred from Sequence or Structural Similarity
more info
 
protein homotrimerization IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
dendrite IEA
Inferred from Electronic Annotation
more info
 
dendrite ISO
Inferred from Sequence Orthology
more info
PubMed 
neuronal cell body IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
PubMed 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
perinuclear region of cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ataxin-10
Names
ataxin 10 homolog
neuronal beta-catenin-like protein
spinocerebellar ataxia 10 homolog
spinocerebellar ataxia type 10 protein homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133313.2NP_579847.1  ataxin-10

    See identical proteins and their annotated locations for NP_579847.1

    Status: PROVISIONAL

    Source sequence(s)
    BC062087
    UniProtKB/Swiss-Prot
    Q9ER24
    Related
    ENSRNOP00000021071.5, ENSRNOT00000021071.6
    Conserved Domains (1) summary
    pfam09759
    Location:370467
    Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    126228416..126351728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    112739769..112861083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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