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Cyp4f13 cytochrome P450, family 4, subfamily f, polypeptide 13 [ Mus musculus (house mouse) ]

Gene ID: 170716, updated on 11-Mar-2023

Summary

Official Symbol
Cyp4f13provided by MGI
Official Full Name
cytochrome P450, family 4, subfamily f, polypeptide 13provided by MGI
Primary source
MGI:MGI:2158641
See related
Ensembl:ENSMUSG00000024055 AllianceGenome:MGI:2158641
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cypf13; 0610030I10Rik
Summary
Predicted to be involved in leukotriene metabolic process. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in duodenum adult (RPKM 29.8), liver adult (RPKM 28.4) and 27 other tissues See more
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Genomic context

See Cyp4f13 in Genome Data Viewer
Location:
17; 17 B1
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (33143662..33166389, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (32924688..32947415, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 870 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 14 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene Neighboring gene zinc finger protein 472

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in fatty acid omega-oxidation ISO
Inferred from Sequence Orthology
more info
 
involved_in leukotriene B4 catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in leukotriene metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in lipoxin A4 metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in lipoxin B4 metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in omega-hydroxylase P450 pathway ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
cytochrome P450, family 4, subfamily f, polypeptide 13
Names
P450 CYP4F13
cytochrome P450 CYP4F13
cytochrome P450,subfamily IVF, polypeptide 13
leukotriene B4 omega hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417675.1NP_001404604.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT033772
  2. NM_001417676.1NP_001404605.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT033772
  3. NM_001417677.1NP_001404606.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT033772
  4. NM_001417678.1NP_001404607.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CT033772
  5. NM_130882.2NP_570952.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform 1

    See identical proteins and their annotated locations for NP_570952.1

    Status: VALIDATED

    Source sequence(s)
    CT033772
    Consensus CDS
    CCDS28622.1
    UniProtKB/TrEMBL
    Q99N19
    Related
    ENSMUSP00000074733.7, ENSMUST00000075253.13
    Conserved Domains (1) summary
    pfam00067
    Location:52513
    p450; Cytochrome P450

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    33143662..33166389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523736.4XP_006523799.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X3

    See identical proteins and their annotated locations for XP_006523799.1

    Conserved Domains (1) summary
    pfam00067
    Location:45372
    p450; Cytochrome P450
  2. XM_030249520.1XP_030105380.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X1

    Conserved Domains (1) summary
    pfam00067
    Location:25448
    p450; Cytochrome P450
  3. XM_030249521.1XP_030105381.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X1

    Conserved Domains (1) summary
    pfam00067
    Location:25448
    p450; Cytochrome P450
  4. XM_006523737.4XP_006523800.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X3

    See identical proteins and their annotated locations for XP_006523800.1

    Conserved Domains (1) summary
    pfam00067
    Location:45372
    p450; Cytochrome P450
  5. XM_006523735.5XP_006523798.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X2

    Conserved Domains (1) summary
    cl41757
    Location:1393
    cytochrome_P450; cytochrome P450 (CYP) superfamily
  6. XM_036160345.1XP_036016238.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X2

    Conserved Domains (1) summary
    cl41757
    Location:1393
    cytochrome_P450; cytochrome P450 (CYP) superfamily
  7. XM_006523738.3XP_006523801.1  cytochrome P450, family 4, subfamily f, polypeptide 13 isoform X4

    Conserved Domains (1) summary
    cl12078
    Location:52374
    p450; Cytochrome P450