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CYME_CMT424C hypothetical protein [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16998232, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMT424C
Gene description
hypothetical protein
Locus tag
CYME_CMT424C
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_010146.1 (1046646..1049186)

Chromosome 20 - NC_010146.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene chloroplast molecular chaperone GrpE Neighboring gene miscRNA Neighboring gene similar to Bax inhibitor-1 Neighboring gene RuvB-like DNA/RNA helicase reptin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010146.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010146.1 Reference assembly

    Range
    1046646..1049186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005539344.1 → XP_005539401.1  hypothetical protein CYME_CMT424C [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005539401.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1V7T7
Nucleotide Protein
Heading Accession and Version

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