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CYME_CMT061C zeta-carotene desaturase [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16998077, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMT061C
Gene description
zeta-carotene desaturase
Locus tag
CYME_CMT061C
Gene type
protein coding
RNA name
zeta-carotene desaturase
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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See CYME_CMT061C in Genome Data Viewer
Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_010146.1 (155817..157715)

Chromosome 20 - NC_010146.1Genomic Context describing neighboring genes Neighboring gene phosphoribosylglycinamide formyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene miscRNA Neighboring gene chloroplast membrane protein ALBINO3 or ARTEMIS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010146.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 9,9'-di-cis-zeta-carotene desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
zeta-carotene desaturase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010146.1 Reference assembly

    Range
    155817..157715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005539063.1 → XP_005539120.1  zeta-carotene desaturase [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005539120.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VC94
    Conserved Domains (2) summary
    PLN02487
    Location:31 → 600
    PLN02487; zeta-carotene desaturase
    pfam13450
    Location:116 → 182
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein
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