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CYME_CMD080C phosphatidylinositol polyphosphate 5-phosphatase [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16992632, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMD080C
Gene description
phosphatidylinositol polyphosphate 5-phosphatase
Locus tag
CYME_CMD080C
Gene type
protein coding
RNA name
phosphatidylinositol polyphosphate 5-phosphatase
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_010130.1 (194968..197412)

Chromosome 4 - NC_010130.1Genomic Context describing neighboring genes Neighboring gene similar to methionine--tRNA ligase, partial Neighboring gene hypothetical protein Neighboring gene probable O-sialoglycoprotein endopeptidase Neighboring gene tRNA-His

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010130.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phosphatidylinositol polyphosphate 5-phosphatase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010130.1 Reference assembly

    Range
    194968..197412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005535387.1 → XP_005535444.1  phosphatidylinositol polyphosphate 5-phosphatase [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005535444.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VF55
    Conserved Domains (3) summary
    COG5411
    Location:61 → 550
    COG5411; Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
    cl00490
    Location:82 → 433
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl02570
    Location:564 → 757
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
Nucleotide Protein
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