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Lrrn1 leucine rich repeat protein 1, neuronal [ Mus musculus (house mouse) ]

Gene ID: 16979, updated on 31-Jan-2019

Summary

Official Symbol
Lrrn1provided by MGI
Official Full Name
leucine rich repeat protein 1, neuronalprovided by MGI
Primary source
MGI:MGI:106038
See related
Ensembl:ENSMUSG00000034648
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NLRR-1; 2810047E21Rik
Expression
Biased expression in adrenal adult (RPKM 59.2), ovary adult (RPKM 34.4) and 9 other tissues See more
Orthologs

Genomic context

See Lrrn1 in Genome Data Viewer
Location:
6; 6 E1
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (107529726..107570228)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (107479779..107520204)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 6_1128.1 Neighboring gene predicted gene, 34933 Neighboring gene predicted gene, 35017 Neighboring gene vomeronasal 1 receptor, pseudogene 37

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
positive regulation of synapse assembly IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
leucine-rich repeat neuronal protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008516.4NP_032542.1  leucine-rich repeat neuronal protein 1 precursor

    See identical proteins and their annotated locations for NP_032542.1

    Status: VALIDATED

    Source sequence(s)
    AC155327, AK139965, AK160841
    Consensus CDS
    CCDS20399.1
    UniProtKB/Swiss-Prot
    Q61809
    Related
    ENSMUSP00000037096.8, ENSMUST00000049285.9
    Conserved Domains (8) summary
    smart00082
    Location:371419
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:11273
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam07679
    Location:429516
    I-set; Immunoglobulin I-set domain
    sd00031
    Location:339362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:531600
    fn3; Fibronectin type III domain
    pfam13855
    Location:119179
    LRR_8; Leucine rich repeat
    cl11960
    Location:431516
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    107529726..107570228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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