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CNBD1 cyclic nucleotide binding domain containing 1 [ Homo sapiens (human) ]

Gene ID: 168975, updated on 19-Jul-2022

Summary

Official Symbol
CNBD1provided by HGNC
Official Full Name
cyclic nucleotide binding domain containing 1provided by HGNC
Primary source
HGNC:HGNC:26663
See related
Ensembl:ENSG00000176571 AllianceGenome:HGNC:26663
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.9) See more
Orthologs
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Genomic context

See CNBD1 in Genome Data Viewer
Location:
8q21.3
Exon count:
13
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (86866415..87428652)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (87987207..88506181)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (87878643..88395087)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit beta 3 Neighboring gene UBE2Q2 pseudogene 10 Neighboring gene uncharacterized LOC107986895 Neighboring gene IARS2 pseudogene 1 Neighboring gene vesicle trafficking 1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35802

General protein information

Preferred Names
cyclic nucleotide-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173538.3NP_775809.1  cyclic nucleotide-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_775809.1

    Status: VALIDATED

    Source sequence(s)
    AC090572, AC100799, BC117328
    Consensus CDS
    CCDS55259.1
    UniProtKB/Swiss-Prot
    Q8NA66
    Related
    ENSP00000430073.1, ENST00000518476.6
    Conserved Domains (1) summary
    cd00038
    Location:331434
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    86866415..87428652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047421411.1XP_047277367.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

  2. XM_024447082.2XP_024302850.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

  3. XM_017013149.2XP_016868638.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

    Related
    ENSP00000430986.2, ENST00000523299.6

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    87987207..88506181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)