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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282669.2 → NP_001269598.1  DNA fragmentation factor subunit beta isoform 1
See identical proteins and their annotated locations for NP_001269598.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AK303065, AL691523, BC032827
- Consensus CDS
-
CCDS72693.1
- UniProtKB/TrEMBL
- B4DZS0, Q96P73
- Related
- ENSP00000339524.4, ENST00000338895.7
- Conserved Domains (2) summary
-
- cd06535
Location:4 → 80
- CIDE_N_CAD; CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are ...
- pfam09230
Location:124 → 347
- DFF40; DNA fragmentation factor 40 kDa
-
NM_001320132.2 → NP_001307061.1  DNA fragmentation factor subunit beta isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region and uses an alternate start codon, compared to variant 1. It encodes isoform 4, which has a shorter and distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AB028912, AF409060, AK027141, BC032827
- UniProtKB/Swiss-Prot
-
O76075
- UniProtKB/TrEMBL
- Q96P73, Q96P74
- Conserved Domains (1) summary
-
- pfam09230
Location:51 → 274
- DFF40; DNA fragmentation factor 40 kDa
-
NM_001320136.2 → NP_001307065.1  DNA fragmentation factor subunit beta isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region and uses a downstrean in-frame start codon, compared to variant 1. It encodes isoform 5, which is shorter at the N-terminus, compared to isoform 1.
- Source sequence(s)
-
AF409062, AK027141, BC032827, DC368011
- UniProtKB/TrEMBL
- Q96P72, Q96P73
- Conserved Domains (1) summary
-
- pfam09230
Location:36 → 259
- DFF40; DNA fragmentation factor 40 kDa
-
NM_004402.4 → NP_004393.1  DNA fragmentation factor subunit beta isoform 2
See identical proteins and their annotated locations for NP_004393.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains two consecutive alternate splice junctions compared to variant 1. The resulting isoform (2) has the same N- and C-termini but lacks an internal segment compared to isoform 1.
- Source sequence(s)
-
AL691523, BC032827, BC048797
- Consensus CDS
-
CCDS52.1
- UniProtKB/Swiss-Prot
- O76075, Q9BYI6
- UniProtKB/TrEMBL
-
Q96P73
- Related
- ENSP00000367454.4, ENST00000378209.8
- Conserved Domains (2) summary
-
- cd06535
Location:4 → 80
- CIDE_N_CAD; CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are ...
- pfam09230
Location:100 → 323
- DFF40; DNA fragmentation factor 40 kDa
RNA
-
NR_104222.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice junction and contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL691523, BC032827
- Related
-
ENST00000468793.5
-
NR_135150.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses alternate splice sites in two internal exons and contains an additional internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB028911, AF409060, AK027141, AL691523, BC032827
- Related
-
ENST00000491998.5
-
NR_135151.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) uses alternate splice sites in two internal exons and contains an additional internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB028913, AF409060, AK027141, BC032827, CN275847
- Related
-
ENST00000477548.5
-
NR_135152.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF409061, AK027141, BC032827, DC368011
- Related
-
ENST00000475969.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11Â Reference GRCh38.p14 Primary Assembly
- Range
-
3857476..3885429
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017000499.2 → XP_016855988.1  DNA fragmentation factor subunit beta isoform X2
-
XM_017000500.2 → XP_016855989.1  DNA fragmentation factor subunit beta isoform X3
-
XM_017000498.3 → XP_016855987.1  DNA fragmentation factor subunit beta isoform X1
-
XM_011540865.3 → XP_011539167.1  DNA fragmentation factor subunit beta isoform X4
- Conserved Domains (2) summary
-
- cd06535
Location:4 → 80
- CIDE_N_CAD; CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are ...
- pfam09230
Location:124 → 168
- DFF40; DNA fragmentation factor 40 kDa
RNA
-
XR_946563.3 RNA Sequence
-
XR_946565.2 RNA Sequence
-
XR_002959574.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1Â Alternate T2T-CHM13v2.0
- Range
-
3369074..3397333
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001004285.1: Suppressed sequence
- Description
- NM_001004285.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_001004286.1: Suppressed sequence
- Description
- NM_001004286.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.