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Lad1 ladinin [ Mus musculus (house mouse) ]

Gene ID: 16763, updated on 23-Jun-2021

Summary

Official Symbol
Lad1provided by MGI
Official Full Name
ladininprovided by MGI
Primary source
MGI:MGI:109343
See related
Ensembl:ENSMUSG00000041782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LADA; lad-1
Expression
Biased expression in colon adult (RPKM 97.9), large intestine adult (RPKM 90.0) and 10 other tissues See more
Orthologs
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Genomic context

See Lad1 in Genome Data Viewer
Location:
1; 1 E4
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (135746336..135761079)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (135818598..135833341)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (137715175..137729918)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology like domain, family A, member 3 Neighboring gene troponin I, skeletal, slow 1 Neighboring gene troponin T2, cardiac Neighboring gene plakophilin 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in actin cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ladinin-1
Names
linear IgA disease antigen homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133664.3NP_598425.2  ladinin-1

    See identical proteins and their annotated locations for NP_598425.2

    Status: VALIDATED

    Source sequence(s)
    AK083526
    Consensus CDS
    CCDS35723.1
    UniProtKB/Swiss-Prot
    P57016
    Related
    ENSMUSP00000044630.9, ENSMUST00000038760.10

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    135746336..135761079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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