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Ky kyphoscoliosis peptidase [ Mus musculus (house mouse) ]

Gene ID: 16716, updated on 9-May-2024

Summary

Official Symbol
Kyprovided by MGI
Official Full Name
kyphoscoliosis peptidaseprovided by MGI
Primary source
MGI:MGI:96709
See related
Ensembl:ENSMUSG00000035606 AllianceGenome:MGI:96709
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ky; CD1; D9Mgc44e
Summary
Predicted to enable peptidase activity. Acts upstream of or within muscle organ development and neuromuscular junction development. Located in Z disc. Human ortholog(s) of this gene implicated in myofibrillar myopathy 7. Orthologous to human KY (kyphoscoliosis peptidase). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in mammary gland adult (RPKM 5.4), heart adult (RPKM 3.6) and 14 other tissues See more
Orthologs
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Genomic context

Location:
9 F1; 9 54.54 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (102382954..102423443)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (102505755..102546247)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene Eph receptor B1 Neighboring gene predicted gene, 51736 Neighboring gene microRNA 7243 Neighboring gene STARR-seq mESC enhancer starr_25062 Neighboring gene STARR-seq mESC enhancer starr_25064 Neighboring gene STARR-seq mESC enhancer starr_25065 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:102442073-102442356 Neighboring gene STARR-positive B cell enhancer mm9_chr9:102444048-102444348 Neighboring gene predicted gene 29387 Neighboring gene WD repeat domain 85 pseudogene Neighboring gene karyopherin alpha 7 (importin alpha 8) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Spontaneous (1)  1 citation

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in muscle organ development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within muscle organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in neuromuscular junction development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within neuromuscular junction development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Z disc IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024291.4NP_077253.3  kyphoscoliosis peptidase

    See identical proteins and their annotated locations for NP_077253.3

    Status: VALIDATED

    Source sequence(s)
    AL450317
    Consensus CDS
    CCDS23445.1
    UniProtKB/Swiss-Prot
    Q8C8H8, Q9EPK9
    UniProtKB/TrEMBL
    F8VQF8
    Related
    ENSMUSP00000036032.5, ENSMUST00000039390.6
    Conserved Domains (1) summary
    smart00460
    Location:217285
    TGc; Transglutaminase/protease-like homologues

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    102382954..102423443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511647.2XP_006511710.1  kyphoscoliosis peptidase isoform X1

    Conserved Domains (1) summary
    COG5279
    Location:182364
    CYK3; Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle control, cell division, chromosome partitioning]