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MIER3 MIER family member 3 [ Homo sapiens (human) ]

Gene ID: 166968, updated on 23-Nov-2021

Summary

Official Symbol
MIER3provided by HGNC
Official Full Name
MIER family member 3provided by HGNC
Primary source
HGNC:HGNC:26678
See related
Ensembl:ENSG00000155545
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in colon (RPKM 18.3), duodenum (RPKM 12.6) and 25 other tissues See more
Orthologs
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Genomic context

See MIER3 in Genome Data Viewer
Location:
5q11.2
Exon count:
15
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (56919602..56952123, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (56215430..56247950, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene growth/differentiation factor 3 Neighboring gene mitogen-activated protein kinase kinase kinase 1 Neighboring gene uncharacterized LOC105378980 Neighboring gene SET domain containing 9 Neighboring gene small nuclear ribonucleoprotein polypeptide B2 pseudogene Neighboring gene Sharpr-MPRA regulatory region 9364

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35954, DKFZp781G1119, DKFZp781I1119, DKFZp686L09111

Gene Ontology Provided by GOA

Function Evidence Code Pubs
NOT contributes_to histone deacetylase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables histone deacetylase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
NOT involved_in histone deacetylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
mesoderm induction early response protein 3
Names
mesoderm induction early response 1, family member 3
mi-er3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297598.2NP_001284527.1  mesoderm induction early response protein 3 isoform 1

    See identical proteins and their annotated locations for NP_001284527.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC008937, AC016644
    Consensus CDS
    CCDS78011.1
    UniProtKB/Swiss-Prot
    Q7Z3K6
    Related
    ENSP00000370624.3, ENST00000381226.7
    Conserved Domains (3) summary
    smart00717
    Location:285332
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11661
    Location:287331
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    pfam01448
    Location:181229
    ELM2; ELM2 domain
  2. NM_001297599.2NP_001284528.1  mesoderm induction early response protein 3 isoform 2

    See identical proteins and their annotated locations for NP_001284528.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the coding region but maintains the reading frame, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AC008937, AC016644
    Consensus CDS
    CCDS75248.1
    UniProtKB/Swiss-Prot
    Q7Z3K6
    Related
    ENSP00000370596.3, ENST00000381199.8
    Conserved Domains (2) summary
    cd11661
    Location:282326
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    pfam01448
    Location:176224
    ELM2; ELM2 domain
  3. NM_152622.5NP_689835.3  mesoderm induction early response protein 3 isoform 3

    See identical proteins and their annotated locations for NP_689835.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has two alternate splice sites in the coding region but maintains the reading frame, compared to variant 1. The resulting isoform (3) lacks an internal segment and an internal aa, compared to isoform 1.
    Source sequence(s)
    AC008937, AC016644
    Consensus CDS
    CCDS3973.2
    UniProtKB/Swiss-Prot
    Q7Z3K6
    Related
    ENSP00000370611.3, ENST00000381213.7
    Conserved Domains (2) summary
    cd11661
    Location:281325
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    pfam01448
    Location:176224
    ELM2; ELM2 domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    56919602..56952123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009149.2XP_016864638.1  mesoderm induction early response protein 3 isoform X3

  2. XM_011543217.2XP_011541519.1  mesoderm induction early response protein 3 isoform X2

    Conserved Domains (3) summary
    smart00717
    Location:295342
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11661
    Location:297341
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    pfam01448
    Location:192240
    ELM2; ELM2 domain
  3. XM_011543216.2XP_011541518.1  mesoderm induction early response protein 3 isoform X1

    Conserved Domains (2) summary
    cd11661
    Location:298342
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    pfam01448
    Location:192240
    ELM2; ELM2 domain
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