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FAM171B family with sequence similarity 171 member B [ Homo sapiens (human) ]

Gene ID: 165215, updated on 5-Aug-2018

Summary

Official Symbol
FAM171Bprovided by HGNC
Official Full Name
family with sequence similarity 171 member Bprovided by HGNC
Primary source
HGNC:HGNC:29412
See related
Ensembl:ENSG00000144369 Vega:OTTHUMG00000154278
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA1946
Expression
Biased expression in brain (RPKM 53.2), adrenal (RPKM 8.4) and 4 other tissues See more
Orthologs

Genomic context

See FAM171B in Genome Data Viewer
Location:
2q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 2 NC_000002.12 (186694062..186763787)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (187558789..187630686)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985784 Neighboring gene integrin subunit alpha V Neighboring gene zinc finger SWIM-type containing 2 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ34104, KIAA1946

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177454.3NP_803237.3  protein FAM171B precursor

    See identical proteins and their annotated locations for NP_803237.3

    Status: VALIDATED

    Source sequence(s)
    AB075826, BC060872
    Consensus CDS
    CCDS33347.1
    UniProtKB/Swiss-Prot
    Q6P995
    Related
    ENSP00000304108.5, OTTHUMP00000205448, ENST00000304698.9, OTTHUMT00000334679
    Conserved Domains (1) summary
    pfam10577
    Location:85826
    UPF0560; uncharacterized protein family UPF0560

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p12 Primary Assembly

    Range
    186694062..186763787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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