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CABP7 calcium binding protein 7 [ Homo sapiens (human) ]

Gene ID: 164633, updated on 30-Jan-2020

Summary

Official Symbol
CABP7provided by HGNC
Official Full Name
calcium binding protein 7provided by HGNC
Primary source
HGNC:HGNC:20834
See related
Ensembl:ENSG00000100314 MIM:618759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CALN2
Expression
Ubiquitous expression in adrenal (RPKM 1.8), brain (RPKM 1.7) and 25 other tissues See more
Orthologs

Genomic context

See CABP7 in Genome Data Viewer
Location:
22q12.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (29720003..29731833)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (30116344..30127822)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2653 Neighboring gene nipsnap homolog 1 Neighboring gene ribulose-5-phosphate-3-epimerase pseudogene 4 Neighboring gene neurofibromin 2 Neighboring gene zinc finger matrin-type 5 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene activating signal cointegrator 1 complex subunit 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Homology

Clone Names

  • MGC57793

Gene Ontology Provided by GOA

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
calcium-binding protein 7
Names
calneuron 2
calneuron II

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182527.3NP_872333.1  calcium-binding protein 7

    See identical proteins and their annotated locations for NP_872333.1

    Status: VALIDATED

    Source sequence(s)
    AA351919, AC004882, BC051805, BX488512
    Consensus CDS
    CCDS13867.1
    UniProtKB/Swiss-Prot
    Q86V35
    Related
    ENSP00000216144.3, ENST00000216144.4
    Conserved Domains (1) summary
    PTZ00184
    Location:27102
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    29720003..29731833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006724161.4XP_006724224.1  calcium-binding protein 7 isoform X1

    Conserved Domains (2) summary
    cd00051
    Location:3798
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:3898
    EF-hand_7; EF-hand domain pair
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