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Ivl involucrin [ Mus musculus (house mouse) ]

Gene ID: 16447, updated on 26-Sep-2022

Summary

Official Symbol
Ivlprovided by MGI
Official Full Name
involucrinprovided by MGI
Primary source
MGI:MGI:96626
See related
Ensembl:ENSMUSG00000049128 AllianceGenome:MGI:96626
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110019C06Rik
Summary
Predicted to be involved in keratinocyte differentiation; peptide cross-linking; and response to UV-B. Located in cornified envelope. Is expressed in alimentary system; genitourinary system; limb digit; skin; and thymus. Orthologous to human IVL (involucrin). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward bladder adult (RPKM 87.0) See more
Orthologs
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Genomic context

See Ivl in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92478206..92481097, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92570899..92573790, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene small proline-rich protein 1A Neighboring gene small proline-rich protein 4 Neighboring gene predicted gene, 35639 Neighboring gene sperm mitochondria-associated cysteine-rich protein Neighboring gene late cornified envelope 6A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in keratinocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in peptide cross-linking ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of antibacterial peptide production IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in response to UV-B ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in cornified envelope IDA
Inferred from Direct Assay
more info
PubMed 
located_in cornified envelope ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008412.3NP_032438.2  involucrin

    See identical proteins and their annotated locations for NP_032438.2

    Status: VALIDATED

    Source sequence(s)
    AA789977, AC125089, BY142984
    Consensus CDS
    CCDS17561.1
    UniProtKB/TrEMBL
    G3X9D9
    Related
    ENSMUSP00000059780.5, ENSMUST00000053107.6
    Conserved Domains (2) summary
    pfam06994
    Location:240278
    Involucrin2
    pfam10583
    Location:167
    Involucrin_N; Involucrin of squamous epithelia N-terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92478206..92481097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501046.1XP_006501109.1  involucrin isoform X1

    See identical proteins and their annotated locations for XP_006501109.1

    UniProtKB/TrEMBL
    G3X9D9
    Conserved Domains (2) summary
    pfam06994
    Location:240278
    Involucrin2
    pfam10583
    Location:167
    Involucrin_N; Involucrin of squamous epithelia N-terminus
  2. XM_006501047.4XP_006501110.1  involucrin isoform X1

    See identical proteins and their annotated locations for XP_006501110.1

    UniProtKB/TrEMBL
    G3X9D9
    Conserved Domains (2) summary
    pfam06994
    Location:240278
    Involucrin2
    pfam10583
    Location:167
    Involucrin_N; Involucrin of squamous epithelia N-terminus