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TTLL9 tubulin tyrosine ligase like 9 [ Homo sapiens (human) ]

Gene ID: 164395, updated on 11-Jun-2021

Summary

Official Symbol
TTLL9provided by HGNC
Official Full Name
tubulin tyrosine ligase like 9provided by HGNC
Primary source
HGNC:HGNC:16118
See related
Ensembl:ENSG00000131044
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf125
Expression
Biased expression in testis (RPKM 3.4), brain (RPKM 0.8) and 3 other tissues See more
Orthologs
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Genomic context

See TTLL9 in Genome Data Viewer
Location:
20q11.21
Exon count:
22
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (31870634..31945000)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (30458437..30532803)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene myosin light chain kinase 2 Neighboring gene dual specificity phosphatase 15 Neighboring gene forkhead box S1 Neighboring gene Sharpr-MPRA regulatory region 918 Neighboring gene RNA, U1 small nuclear 94, pseudogene Neighboring gene p53 and DNA damage regulated 1 Neighboring gene XK related 7 Neighboring gene RNA, 5S ribosomal pseudogene 481

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC120486, MGC120487, dJ310O13.1

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables tubulin-glutamic acid ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in flagellated sperm motility IEA
Inferred from Electronic Annotation
more info
 
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein polyglutamylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 
is_active_in cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
probable tubulin polyglutamylase TTLL9
Names
tubulin tyrosine ligase-like family, member 9
tubulin--tyrosine ligase-like protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008409.5NP_001008409.1  probable tubulin polyglutamylase TTLL9 isoform 1

    See identical proteins and their annotated locations for NP_001008409.1

    Status: VALIDATED

    Source sequence(s)
    AK093491, AL031658, AL160175, BC036213, DC311815
    Consensus CDS
    CCDS42863.1
    UniProtKB/Swiss-Prot
    Q3SXZ7
    Related
    ENSP00000442515.1, ENST00000535842.5
    Conserved Domains (1) summary
    pfam03133
    Location:92368
    TTL; Tubulin-tyrosine ligase family
  2. NM_001367620.2NP_001354549.1  probable tubulin polyglutamylase TTLL9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL359765
    Related
    ENSP00000483865.1, ENST00000620043.4

RNA

  1. NR_134519.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL160175, AL359765
    Related
    ENST00000375921.6
  2. NR_148010.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK093491, AL031658, AL160175, BC104024, BU679850, DC311815
  3. NR_148011.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL160175, AL359765
    Related
    ENST00000644596.1
  4. NR_148012.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL160175, BC104025
  5. NR_148013.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK093491, AL031658, AL160175
  6. NR_148014.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL160175, AL359765
  7. NR_160276.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL359765
    Related
    ENST00000642230.1
  8. NR_160277.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031658, AL359765

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    31870634..31945000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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