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FNDC7 fibronectin type III domain containing 7 [ Homo sapiens (human) ]

Gene ID: 163479, updated on 12-Oct-2019

Summary

Official Symbol
FNDC7provided by HGNC
Official Full Name
fibronectin type III domain containing 7provided by HGNC
Primary source
HGNC:HGNC:26668
See related
Ensembl:ENSG00000143107
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See FNDC7 in Genome Data Viewer
Location:
1p13.3
Exon count:
13
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (108712908..108742749)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (109255556..109285371)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378890 Neighboring gene pre-mRNA processing factor 38B Neighboring gene N-acetylneuraminic acid phosphatase pseudogene Neighboring gene syntaxin binding protein 3 Neighboring gene uncharacterized LOC105378891 Neighboring gene AKNA domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ35838, MGC163293

Gene Ontology Provided by GOA

Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fibronectin type III domain-containing protein 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144937.3NP_001138409.1  fibronectin type III domain-containing protein 7 precursor

    See identical proteins and their annotated locations for NP_001138409.1

    Status: VALIDATED

    Source sequence(s)
    AL591719, BC057762, BC130421
    Consensus CDS
    CCDS44185.1
    UniProtKB/Swiss-Prot
    Q5VTL7
    Related
    ENSP00000359034.3, ENST00000370017.9
    Conserved Domains (3) summary
    smart00060
    Location:115186
    FN3; Fibronectin type 3 domain
    cd00063
    Location:201285
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:27105
    fn3; Fibronectin type III domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    108712908..108742749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173532.1: Suppressed sequence

    Description
    NM_173532.1: This RefSeq was temporarily suppressed because the CDS was partial.
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