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ZNF100 zinc finger protein 100 [ Homo sapiens (human) ]

Gene ID: 163227, updated on 1-Aug-2020

Summary

Official Symbol
ZNF100provided by HGNC
Official Full Name
zinc finger protein 100provided by HGNC
Primary source
HGNC:HGNC:12880
See related
Ensembl:ENSG00000197020 MIM:603982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 4.3), lymph node (RPKM 3.3) and 25 other tissues See more
Orthologs

Genomic context

See ZNF100 in Genome Data Viewer
Location:
19p12
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (21722771..21767579, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (21906417..21950430, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene metadherin pseudogene 4 Neighboring gene vomeronasal 1 receptor 84 pseudogene Neighboring gene cyclin Y like 6 (pseudogene) Neighboring gene BRI3 binding protein pseudogene 1 Neighboring gene zinc finger protein 43 Neighboring gene BCL2 interacting protein 3 pseudogene 27

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ44587

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 100
Names
zinc finger protein 100 (Y1)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054926.1 RefSeqGene

    Range
    5050..49858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001351669.2NP_001338598.1  zinc finger protein 100 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC092364
    Conserved Domains (3) summary
    smart00349
    Location:3595
    KRAB; krueppel associated box
    COG5048
    Location:258525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:234254
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001351670.2NP_001338599.1  zinc finger protein 100 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC092364
    Conserved Domains (3) summary
    COG5048
    Location:226493
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:202222
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3474
    KRAB; KRAB box
  3. NM_001351671.2NP_001338600.1  zinc finger protein 100 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC092364
    Conserved Domains (2) summary
    COG5048
    Location:158425
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:134154
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. NM_001351672.2NP_001338601.1  zinc finger protein 100 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC092364
    Conserved Domains (2) summary
    COG5048
    Location:44311
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:2040
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. NM_173531.4NP_775802.2  zinc finger protein 100 isoform 1

    See identical proteins and their annotated locations for NP_775802.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC092364, AK126551, CN302052, DA241750
    Consensus CDS
    CCDS42538.1
    UniProtKB/Swiss-Prot
    Q8IYN0
    Related
    ENSP00000351042.5, ENST00000358296.11
    Conserved Domains (5) summary
    smart00349
    Location:3596
    KRAB; krueppel associated box
    COG5048
    Location:150534
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:3574
    KRAB; KRAB box
    pfam13465
    Location:248272
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    21722771..21767579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315964.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    83961..128769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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