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ZNF709 zinc finger protein 709 [ Homo sapiens (human) ]

Gene ID: 163051, updated on 11-Jun-2021

Summary

Official Symbol
ZNF709provided by HGNC
Official Full Name
zinc finger protein 709provided by HGNC
Primary source
HGNC:HGNC:20629
See related
Ensembl:ENSG00000242852
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.8), thyroid (RPKM 1.7) and 24 other tissues See more
Orthologs
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Genomic context

See ZNF709 in Genome Data Viewer
Location:
19p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (12461184..12484816, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12571998..12595630, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 799 Neighboring gene zinc finger protein 443 Neighboring gene MT-ND2 pseudogene 40 Neighboring gene MT-CO1 pseudogene 27

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ38281

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152601.4NP_689814.1  zinc finger protein 709

    See identical proteins and their annotated locations for NP_689814.1

    Status: VALIDATED

    Source sequence(s)
    AC008758, BQ027911, BX954970, DA493682
    Consensus CDS
    CCDS42504.1
    UniProtKB/Swiss-Prot
    Q8N972
    Related
    ENSP00000380840.3, ENST00000397732.8
    Conserved Domains (4) summary
    COG5048
    Location:77551
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:478498
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:344
    KRAB; KRAB box
    pfam13465
    Location:574599
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    12461184..12484816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145647.1: Suppressed sequence

    Description
    NM_001145647.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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