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ZNF564 zinc finger protein 564 [ Homo sapiens (human) ]

Gene ID: 163050, updated on 3-May-2020

Summary

Official Symbol
ZNF564provided by HGNC
Official Full Name
zinc finger protein 564provided by HGNC
Primary source
HGNC:HGNC:31106
See related
Ensembl:ENSG00000249709
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 4.7), endometrium (RPKM 4.1) and 25 other tissues See more
Orthologs

Genomic context

See ZNF564 in Genome Data Viewer
Location:
19p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (12525373..12551482, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12636184..12691789, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene MT-ATP6 pseudogene 27 Neighboring gene peptidylprolyl isomerase A pseudogene 20 Neighboring gene Sharpr-MPRA regulatory region 88 Neighboring gene uncharacterized LOC105372278 Neighboring gene phosphoglycerate kinase 1, pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: ZNF709

Homology

Clone Names

  • FLJ38281, MGC26914

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144976.4NP_659413.1  zinc finger protein 564

    See identical proteins and their annotated locations for NP_659413.1

    Status: VALIDATED

    Source sequence(s)
    BC028367, DA619098
    Consensus CDS
    CCDS42505.1
    UniProtKB/Swiss-Prot
    Q8TBZ8
    Related
    ENSP00000340004.6, ENST00000339282.12
    Conserved Domains (5) summary
    smart00349
    Location:446
    KRAB; krueppel associated box
    COG5048
    Location:85523
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:451471
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:155180
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    12525373..12551482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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