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Gimap1 GTPase, IMAP family member 1 [ Mus musculus (house mouse) ]

Gene ID: 16205, updated on 26-Sep-2022

Summary

Official Symbol
Gimap1provided by MGI
Official Full Name
GTPase, IMAP family member 1provided by MGI
Primary source
MGI:MGI:109368
See related
Ensembl:ENSMUSG00000090019 AllianceGenome:MGI:109368
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
imap; IAP38; Imap38
Summary
This gene encodes a protein belonging to the GTP-binding superfamily and to the immuno-associated nucleotide (IAN) subfamily of nucleotide-binding proteins. In humans, the IAN subfamily genes are located in a cluster at 7q36.1. Sequence analysis identified two alternatively spliced variants that encode the same protein. [provided by RefSeq, Jul 2008]
Expression
Biased expression in spleen adult (RPKM 37.2), thymus adult (RPKM 24.9) and 11 other tissues See more
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Genomic context

See Gimap1 in Genome Data Viewer
Location:
6; 6 B2.3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48715981..48720729)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48739047..48743795)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene GTPase, IMAP family member 6 Neighboring gene GTPase, IMAP family member 7 Neighboring gene GTPase, IMAP family member 5 Neighboring gene GTPase, IMAP family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Chemically induced (ENU) (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTP binding IDA
Inferred from Direct Assay
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
GTPase IMAP family member 1
Names
immune associated nucleotide family member
immune-associated protein 38
immunity-associated protein 1
immunity-associated protein, 38 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008376.3NP_032402.2  GTPase IMAP family member 1

    See identical proteins and their annotated locations for NP_032402.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) is the longer and predominant variant. Both variants encode the same protein.
    Source sequence(s)
    CAAA01157263
    Consensus CDS
    CCDS20113.1
    UniProtKB/TrEMBL
    Q3TFI6
    Related
    ENSMUSP00000062108.5, ENSMUST00000054368.7
    Conserved Domains (2) summary
    cd01852
    Location:27229
    AIG1; AvrRpt2-Induced Gene 1 (AIG1)
    cl00459
    Location:217294
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily
  2. NM_175860.2NP_787056.1  GTPase IMAP family member 1

    See identical proteins and their annotated locations for NP_787056.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1, that results in a shorter transcript. Both variants encode the same protein.
    Source sequence(s)
    CAAA01157263
    Consensus CDS
    CCDS20113.1
    UniProtKB/TrEMBL
    Q3TFI6
    Related
    ENSMUSP00000145479.2, ENSMUST00000204168.2
    Conserved Domains (2) summary
    cd01852
    Location:27229
    AIG1; AvrRpt2-Induced Gene 1 (AIG1)
    cl00459
    Location:217294
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    48715981..48720729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)