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GARIN2 golgi associated RAB2 interactor family member 2 [ Homo sapiens (human) ]

Gene ID: 161142, updated on 9-Jan-2022

Summary

Official Symbol
GARIN2provided by HGNC
Official Full Name
golgi associated RAB2 interactor family member 2provided by HGNC
Primary source
HGNC:HGNC:20101
See related
Ensembl:ENSG00000172717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM71D; GARI-L1; GARI-L2; C14orf54
Expression
Restricted expression toward testis (RPKM 6.6) See more
Orthologs
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Genomic context

See GARIN2 in Genome Data Viewer
Location:
14q23.3
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (67188365..67228558)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (67656157..67695275)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene gephyrin Neighboring gene probable ribosome biogenesis protein RLP24 pseudogene Neighboring gene uncharacterized LOC105370538 Neighboring gene Sharpr-MPRA regulatory region 5377 Neighboring gene splicing factor 3b, subunit 4 pseudogene 1 Neighboring gene protein associated with LIN7 1, MAGUK p55 family member Neighboring gene ATPase H+ transporting V1 subunit D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ36130

General protein information

Preferred Names
protein FAM71D
Names
family with sequence similarity 71 member D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395907.1NP_001382836.1  protein FAM71D isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL135978
  2. NM_173526.4NP_775797.2  protein FAM71D isoform 2

    See identical proteins and their annotated locations for NP_775797.2

    Status: VALIDATED

    Source sequence(s)
    AK093449, AL135978, BC050401
    Consensus CDS
    CCDS9778.1
    UniProtKB/Swiss-Prot
    Q8N9W8
    Related
    ENSP00000431905.1, ENST00000311864.7
    Conserved Domains (1) summary
    pfam12480
    Location:112185
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    67188365..67228558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011536503.2XP_011534805.1  protein FAM71D isoform X1

    See identical proteins and their annotated locations for XP_011534805.1

    UniProtKB/Swiss-Prot
    Q8N9W8
    Conserved Domains (1) summary
    pfam12480
    Location:112185
    DUF3699; Protein of unknown function (DUF3699)
  2. XM_011536500.1XP_011534802.1  protein FAM71D isoform X1

    See identical proteins and their annotated locations for XP_011534802.1

    UniProtKB/Swiss-Prot
    Q8N9W8
    Conserved Domains (1) summary
    pfam12480
    Location:112185
    DUF3699; Protein of unknown function (DUF3699)
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