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C11orf42 chromosome 11 open reading frame 42 [ Homo sapiens (human) ]

Gene ID: 160298, updated on 23-Nov-2021

Summary

Official Symbol
C11orf42provided by HGNC
Official Full Name
chromosome 11 open reading frame 42provided by HGNC
Primary source
HGNC:HGNC:28541
See related
Ensembl:ENSG00000180878
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.0), skin (RPKM 0.8) and 18 other tissues See more
Orthologs
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Genomic context

See C11orf42 in Genome Data Viewer
Location:
11p15.4
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (6201905..6226783)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (6226787..6232365)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 52 subfamily B member 2 Neighboring gene olfactory receptor family 52 subfamily W member 1 Neighboring gene FHF complex subunit HOOK interacting protein 1B Neighboring gene cyclic nucleotide gated channel subunit alpha 4 Neighboring gene cholecystokinin B receptor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC34805

General protein information

Preferred Names
uncharacterized protein C11orf42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173525.3NP_775796.2  uncharacterized protein C11orf42

    See identical proteins and their annotated locations for NP_775796.2

    Status: VALIDATED

    Source sequence(s)
    AA781757, AC022762, BC031612
    Consensus CDS
    CCDS7759.1
    UniProtKB/Swiss-Prot
    Q8N5U0
    Related
    ENSP00000321021.2, ENST00000316375.3
    Conserved Domains (1) summary
    pfam15668
    Location:1328
    DUF4663; Domain of unknown function (DUF4663)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    6201905..6226783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011519926.3XP_011518228.1  uncharacterized protein C11orf42 isoform X1

    Conserved Domains (1) summary
    pfam15668
    Location:1290
    DUF4663; Domain of unknown function (DUF4663)
  2. XM_011519927.3XP_011518229.1  uncharacterized protein C11orf42 isoform X2

    Conserved Domains (1) summary
    pfam15668
    Location:1290
    DUF4663; Domain of unknown function (DUF4663)
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