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TCEAL6 transcription elongation factor A like 6 [ Homo sapiens (human) ]

Gene ID: 158931, updated on 29-Mar-2023

Summary

Official Symbol
TCEAL6provided by HGNC
Official Full Name
transcription elongation factor A like 6provided by HGNC
Primary source
HGNC:HGNC:24553
See related
AllianceGenome:HGNC:24553
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
WEX2; Tceal3
Summary
Predicted to enable WW domain binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: suggests misassembly
Expression
Biased expression in brain (RPKM 18.6), testis (RPKM 12.2) and 4 other tissues See more
Orthologs
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Genomic context

See TCEAL6 in Genome Data Viewer
Location:
Xq22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (102138502..102142481, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (100583085..100587065, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (101393474..101397453, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MT-ND6 pseudogene 13 Neighboring gene transcription elongation factor A like 2 Neighboring gene uncharacterized LOC105373299 Neighboring gene brain expressed X-linked 5 Neighboring gene t-complex 11 family, X-linked 3, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
transcription elongation factor A protein-like 6
Names
TCEA-like protein 6
transcription elongation factor A (SII)-like 3
transcription elongation factor A (SII)-like 6
transcription elongation factor S-II protein-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006938.3NP_001006939.2  transcription elongation factor A protein-like 6 isoform 2

    See identical proteins and their annotated locations for NP_001006939.2

    Status: VALIDATED

    Source sequence(s)
    Z70719
    UniProtKB/TrEMBL
    A0A024RCH0
    Conserved Domains (2) summary
    pfam04538
    Location:72173
    BEX; Brain expressed X-linked like family
    pfam15724
    Location:2794
    TMEM119; TMEM119 family
  2. NM_001367790.1NP_001354719.1  transcription elongation factor A protein-like 6 isoform 1

    Status: VALIDATED

    Source sequence(s)
    Z70719
    UniProtKB/Swiss-Prot
    Q5H9J8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    102138502..102142481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791816.1 Reference GRCh38.p14 PATCHES

    Range
    33591..37571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    100583085..100587065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)